RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	SNF8	Q12483	233 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	RPC40	P07703	335 aa	Known RBP	3.47	□□□□□ -1.85
UBX5	YDR330W	MSF1	P08425	469 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	GAL3	P13045	520 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	DPB2	P24482	689 aa	Predicted RBP	3.47	□□□□□ -1.85
UBX5	YDR330W	TIP1	P27654	210 aa	Predicted RBP	3.47	□□□□□ -1.85
UBX5	YDR330W	NDC1	P32500	655 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	GLC7	P32598	312 aa	Known RBP	3.47	□□□□□ -1.85
UBX5	YDR330W	MRPL6	P32904	214 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	SKN1	P33336	771 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	ATP3	P38077	311 aa	Known RBP	3.47	□□□□□ -1.85
UBX5	YDR330W	ARC40	P38328	384 aa	Known RBP	3.47	□□□□□ -1.85
UBX5	YDR330W	RCK1	P38622	512 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	STP2	P38704	541 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	ATG7	P38862	630 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	AVT6	P40074	448 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	YIL169C	P40442	995 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	COG7	P53195	279 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	POP6	P53218	158 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	URC2	Q04411	772 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	GRS2	Q06817	618 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	PEX27	Q08580	376 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	VIK1	Q12045	647 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	YPR011C	Q12251	326 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	RNH203	Q12338	110 aa		3.47	□□□□□ -1.85
UBX5	YDR330W	YPR096C	O13587	100 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	TIM9	O74700	87 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	TPK3	P05986	398 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	RPL12A	P0CX53	165 aa	Known RBP	3.46	□□□□□ -1.86
UBX5	YDR330W	RPL12B	P0CX54	165 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	UNG1	P12887	359 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	YSR3	P23501	404 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	DAL80	P26343	269 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	RPS5	P26783	225 aa	Known RBP	3.46	□□□□□ -1.86
UBX5	YDR330W	DOA1	P36037	715 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	ECM8	P38246	354 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	YHR127W	P38833	243 aa	Known RBP	3.46	□□□□□ -1.86
UBX5	YDR330W	MNN9	P39107	395 aa	Known RBP	3.46	□□□□□ -1.86
UBX5	YDR330W	FAR7	P43592	221 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	AVT4	P50944	713 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	ZRG17	P53735	605 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	GOR1	P53839	350 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	IGO1	P53897	168 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	YNL140C	P53910	189 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	SED5	Q01590	340 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	SWP1	Q02795	286 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	YMR310C	Q04867	317 aa	Predicted RBP	3.46	□□□□□ -1.86
UBX5	YDR330W	ARR1	Q06596	294 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	SNA4	Q07549	140 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	YPL199C	Q08954	240 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	SRL2	Q12020	392 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	MSH5	Q12175	901 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	RGT2	Q12300	763 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	RIB3	Q99258	208 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	TAD3	Q9URQ3	322 aa		3.46	□□□□□ -1.86
UBX5	YDR330W	ARF1	P11076	181 aa	Known RBP	3.45	□□□□□ -1.86
UBX5	YDR330W	CBS2	P14905	389 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	FPR1	P20081	114 aa	Known RBP	3.45	□□□□□ -1.86
UBX5	YDR330W	SAG1	P20840	650 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	GRR1	P24814	1151 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	TRX3	P25372	127 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	HMX1	P32339	317 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	VMA6	P32366	345 aa	Known RBP	3.45	□□□□□ -1.86
UBX5	YDR330W	SEC17	P32602	292 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	CAT2	P32796	670 aa	Known RBP	3.45	□□□□□ -1.86
UBX5	YDR330W	SPO23	P33757	523 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	UTP11	P34247	250 aa	Predicted RBP	3.45	□□□□□ -1.86
UBX5	YDR330W	VPS21	P36017	210 aa	Known RBP	3.45	□□□□□ -1.86
UBX5	YDR330W	YPT35	P38815	214 aa	Known RBP	3.45	□□□□□ -1.86
UBX5	YDR330W	EGD2	P38879	174 aa	Known RBP	3.45	□□□□□ -1.86
UBX5	YDR330W	MET30	P39014	640 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	MST28	P39552	234 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	YEL073C	P39974	107 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	MPM1	P40364	252 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	SER33	P40510	469 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	YFR018C	P43599	363 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	RRN5	Q02983	363 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	SRL4	Q03085	281 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	TLG1	Q03322	224 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	YDL199C	Q12407	687 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	AHC1	Q12433	566 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	MED11	Q99278	115 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	STT4	P37297	1900 aa		3.45	□□□□□ -1.86
UBX5	YDR330W	OPI3	P05375	206 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	YKR104W	P0CE69	306 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	KKQ8	P36004	724 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	MED6	P38782	295 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	GGC1	P38988	300 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	GIM4	P40005	111 aa	Known RBP	3.44	□□□□□ -1.86
UBX5	YDR330W	KRE29	P40026	464 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	PMT4	P46971	762 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	CAF40	P53829	373 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	IMP4	P53941	290 aa	Known RBP	3.44	□□□□□ -1.86
UBX5	YDR330W	ATG10	Q07879	167 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	RRT8	Q08219	342 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	YPL119C-A	Q3E751	87 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	MHF1	Q3E835	90 aa		3.44	□□□□□ -1.86
UBX5	YDR330W	RPL20A	P0CX23	172 aa	Known RBP	3.44	□□□□□ -1.86
UBX5	YDR330W	RPL20B	P0CX24	172 aa	Predicted RBP	3.44	□□□□□ -1.86
UBX5	YDR330W	YCR043C	P25361	127 aa		3.44	□□□□□ -1.86

Retrieved 100 of 5,963 RNA–protein pairs in 29.4 ms