RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	TMC1	Q08422	150 aa	Predicted RBP	4.12	□□□□□ -1.75
RRP40	YOL142W	SNX3	Q08826	162 aa	Known RBP	4.12	□□□□□ -1.75
RRP40	YOL142W	HSP42	Q12329	375 aa		4.12	□□□□□ -1.75
RRP40	YOL142W	MHT1	Q12525	324 aa		4.12	□□□□□ -1.75
RRP40	YOL142W	ILV5	P06168	395 aa	Known RBP	4.11	□□□□□ -1.75
RRP40	YOL142W	COS2	P0CX12	379 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	COS3	P0CX13	379 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	RHB1	P25378	209 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	MEI5	P32489	222 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	COX13	P32799	129 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	YME2	P32843	850 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	KKQ8	P36004	724 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	COS4	P43542	379 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	NAS6	P50086	228 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	YPT32	P51996	222 aa	Known RBP	4.11	□□□□□ -1.75
RRP40	YOL142W	MRM2	P53123	320 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	FAR10	Q06001	478 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	REX4	Q08237	289 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	RKM1	Q08961	583 aa	Predicted RBP	4.11	□□□□□ -1.75
RRP40	YOL142W	YPR011C	Q12251	326 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	YDR262W	Q12331	272 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	YCL012C	Q8J0M4	134 aa		4.11	□□□□□ -1.75
RRP40	YOL142W	TRP1	P00912	224 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	RPS8A	P0CX39	200 aa	Known RBP	4.1	□□□□□ -1.75
RRP40	YOL142W	RPS8B	P0CX40	200 aa	Known RBP	4.1	□□□□□ -1.75
RRP40	YOL142W	DBR1	P24309	405 aa	Known RBP	4.1	□□□□□ -1.75
RRP40	YOL142W	CTR86	P25355	563 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	RPC19	P28000	142 aa	Known RBP	4.1	□□□□□ -1.75
RRP40	YOL142W	CWP1	P28319	239 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	HIR2	P32480	875 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	PTC1	P35182	281 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	CAF4	P36130	643 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	NOP19	P53317	196 aa	Predicted RBP	4.1	□□□□□ -1.75
RRP40	YOL142W	MTM1	P53320	366 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	CUS2	P53830	285 aa	Predicted RBP	4.1	□□□□□ -1.75
RRP40	YOL142W	BET5	Q03630	159 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	ROY1	Q04847	553 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	MHR1	Q06630	226 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	YLR413W	Q06689	675 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	YOR114W	Q12219	294 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	YOL107W	Q12239	342 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	RBD2	Q12270	262 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	ATG34	Q12292	412 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	YDR061W	Q12298	539 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	SRN2	Q99176	213 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	ISN1	Q99312	450 aa		4.1	□□□□□ -1.75
RRP40	YOL142W	DST1	P07273	309 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	GAL7	P08431	366 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	SLM5	P25345	492 aa	Known RBP	4.09	□□□□□ -1.75
RRP40	YOL142W	ADE1	P27616	306 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	MNS1	P32906	549 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	SOR1	P35497	357 aa	Known RBP	4.09	□□□□□ -1.75
RRP40	YOL142W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
RRP40	YOL142W	RRN10	P38204	145 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	BMT2	P38278	337 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	YGR250C	P53316	781 aa	Known RBP	4.09	□□□□□ -1.75
RRP40	YOL142W	YNL260C	P53846	198 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	YNL010W	P53981	241 aa	Known RBP	4.09	□□□□□ -1.75
RRP40	YOL142W	YDR124W	Q04608	324 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	YLR456W	Q06199	204 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	SOR2	Q07786	357 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	SKI7	Q08491	747 aa	Predicted RBP	4.09	□□□□□ -1.75
RRP40	YOL142W	JLP1	Q12358	412 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	YKL018C-A	Q3E7A7	99 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	YIL046W-A	Q3E7Z4	54 aa		4.09	□□□□□ -1.75
RRP40	YOL142W	NFT1	P0CE68	1218 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	TRX3	P25372	127 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	PHO91	P27514	894 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	SFC1	P33303	322 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	APQ12	P40532	138 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	TMA22	P47089	198 aa	Predicted RBP	4.08	□□□□□ -1.76
RRP40	YOL142W	CWC25	P53854	179 aa	Known RBP	4.08	□□□□□ -1.76
RRP40	YOL142W	PRP38	Q00723	242 aa	Predicted RBP	4.08	□□□□□ -1.76
RRP40	YOL142W	SKO1	Q02100	647 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	RSN1	Q03516	953 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	ECM11	Q04110	302 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	YLR030W	Q07967	263 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	UAF30	Q08747	228 aa		4.08	□□□□□ -1.76
RRP40	YOL142W	SLF1	Q12034	447 aa	Known RBP	4.08	□□□□□ -1.76
RRP40	YOL142W	REC107	P21651	314 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	RVS161	P25343	265 aa	Known RBP	4.07	□□□□□ -1.76
RRP40	YOL142W	YCR087C-A	P37263	153 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	ATG7	P38862	630 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	PRM10	P42946	383 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	BIO3	P50277	480 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	USE1	P53146	245 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	GPI15	P53961	229 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	YLR152C	P54072	576 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	REX2	P54964	269 aa	Known RBP	4.07	□□□□□ -1.76
RRP40	YOL142W	YET2	Q04210	160 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	BSC6	Q08280	497 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	RRP40	Q08285	240 aa	Known RBP	4.07	□□□□□ -1.76
RRP40	YOL142W	LAG2	Q92325	660 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	SAS5	Q99314	248 aa		4.07	□□□□□ -1.76
RRP40	YOL142W	SCEI	P03882	235 aa		4.06	□□□□□ -1.76
RRP40	YOL142W	CYC3	P06182	269 aa		4.06	□□□□□ -1.76
RRP40	YOL142W	DAL82	P21705	255 aa		4.06	□□□□□ -1.76
RRP40	YOL142W	SPO23	P33757	523 aa		4.06	□□□□□ -1.76
RRP40	YOL142W	AYR1	P40471	297 aa		4.06	□□□□□ -1.76
RRP40	YOL142W	GTO1	P48239	356 aa		4.06	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 22.3 ms