RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	SRL4	Q03085	281 aa		4.08	□□□□□ -1.76
DEG1	YFL001W	HRI1	Q05905	244 aa	Known RBP	4.08	□□□□□ -1.76
DEG1	YFL001W	RBD2	Q12270	262 aa		4.08	□□□□□ -1.76
DEG1	YFL001W	HMS1	Q12398	434 aa		4.08	□□□□□ -1.76
DEG1	YFL001W	IZH4	Q99393	312 aa		4.08	□□□□□ -1.76
DEG1	YFL001W	RPL31A	P0C2H8	113 aa	Known RBP	4.07	□□□□□ -1.76
DEG1	YFL001W	MIR1	P23641	311 aa	Known RBP	4.07	□□□□□ -1.76
DEG1	YFL001W	FMP46	P36141	133 aa	Known RBP	4.07	□□□□□ -1.76
DEG1	YFL001W	KRE9	P39005	276 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	YNL208W	P40159	199 aa	Known RBP	4.07	□□□□□ -1.76
DEG1	YFL001W	PAN6	P40459	309 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	YGR210C	P42942	411 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	ATG18	P43601	500 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	YJL118W	P47022	219 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	CWC21	Q03375	135 aa	Known RBP	4.07	□□□□□ -1.76
DEG1	YFL001W	SNX41	Q04053	625 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	CTS2	Q06350	511 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	TAF10	Q12030	206 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	SGT2	Q12118	346 aa	Known RBP	4.07	□□□□□ -1.76
DEG1	YFL001W	MCT1	Q12283	360 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	SFM1	Q12314	213 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	IZH2	Q12442	317 aa		4.07	□□□□□ -1.76
DEG1	YFL001W	ROM2	P51862	1356 aa	Known RBP	4.07	□□□□□ -1.76
DEG1	YFL001W	ADH2	P00331	348 aa	Known RBP	4.06	□□□□□ -1.76
DEG1	YFL001W	CBS2	P14905	389 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	CTA1	P15202	515 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	PMT2	P31382	759 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	PDC2	P32896	925 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	RPC37	P36121	282 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	YHR045W	P38775	560 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	YAT2	P40017	923 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	SHQ1	P40486	507 aa	Predicted RBP	4.06	□□□□□ -1.76
DEG1	YFL001W	MOB2	P43563	287 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	CRH1	P53301	507 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	ASR1	Q06834	288 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	IRC25	Q07951	179 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	BTS1	Q12051	335 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	ATP16	Q12165	160 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	PRM4	Q12498	284 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	YMR230W-A	Q3E7B5	62 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	NAG1	Q8TGN9	163 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	TY4B-H	P0C2J7	1802 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	TY4B-J	P47024	1803 aa		4.06	□□□□□ -1.76
DEG1	YFL001W	PET123	P17558	318 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	LDS1	P31379	325 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	YKL063C	P35725	167 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	MCH2	P36032	473 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	TDA11	P38854	504 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	HEM14	P40012	539 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	RTR1	P40084	226 aa	Predicted RBP	4.05	□□□□□ -1.76
DEG1	YFL001W	BNA6	P43619	295 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	AIM23	P47015	356 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	BIR1	P47134	954 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	SWC4	P53201	476 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	VAC7	P53950	1165 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	FSH2	Q05015	223 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	UTP23	Q12339	254 aa	Known RBP	4.05	□□□□□ -1.76
DEG1	YFL001W	SIR4	P11978	1358 aa		4.05	□□□□□ -1.76
DEG1	YFL001W	YRF1-2	P40105	1681 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	RPP0	P05317	312 aa	Known RBP	4.04	□□□□□ -1.76
DEG1	YFL001W	GIT1	P25346	518 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	NAM9	P27929	486 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	CWP1	P28319	239 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	PRR1	P28708	518 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	NTG1	P31378	399 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	ARO4	P32449	370 aa	Known RBP	4.04	□□□□□ -1.76
DEG1	YFL001W	NUP2	P32499	720 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	SOP4	P39543	234 aa	Predicted RBP	4.04	□□□□□ -1.76
DEG1	YFL001W	YER186C	P40101	306 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	FMC1	P40491	155 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	GDS1	P41913	522 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	GCN20	P43535	752 aa	Known RBP	4.04	□□□□□ -1.76
DEG1	YFL001W	UBC13	P52490	153 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	YGL260W	P53056	76 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	BOR1	P53838	576 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	PET117	Q02771	107 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	SKI8	Q02793	397 aa	Predicted RBP	4.04	□□□□□ -1.76
DEG1	YFL001W	YMR209C	Q03648	457 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	GAS2	Q06135	555 aa		4.04	□□□□□ -1.76
DEG1	YFL001W	MRX9	Q07349	420 aa	Known RBP	4.04	□□□□□ -1.76
DEG1	YFL001W	DTD1	Q07648	150 aa	Known RBP	4.04	□□□□□ -1.76
DEG1	YFL001W	QCR6	P00127	147 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	RPS14A	P06367	137 aa	Known RBP	4.03	□□□□□ -1.76
DEG1	YFL001W	SPS100	P13130	326 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	RRT12	P25381	491 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	RPL16B	P26785	198 aa	Known RBP	4.03	□□□□□ -1.76
DEG1	YFL001W	KTI12	P34253	313 aa	Known RBP	4.03	□□□□□ -1.76
DEG1	YFL001W	CHL4	P38907	458 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	RPS14B	P39516	138 aa	Known RBP	4.03	□□□□□ -1.76
DEG1	YFL001W	COA1	P40452	197 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	TIS11	P47977	285 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	TIM21	P53220	239 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	MNT4	P53745	580 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	FAR10	Q06001	478 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	YDL144C	Q07589	356 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	BSC6	Q08280	497 aa		4.03	□□□□□ -1.76
DEG1	YFL001W	ILV1	P00927	576 aa	Known RBP	4.02	□□□□□ -1.77
DEG1	YFL001W	RAD3	P06839	778 aa		4.02	□□□□□ -1.77
DEG1	YFL001W	MET16	P18408	261 aa	Predicted RBP	4.02	□□□□□ -1.77
DEG1	YFL001W	YPC1	P38298	316 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms