RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C AQR1P53943 586 aa1.03□□□□□ -2.24
PCF11YDR228C NBL1Q3E7Y6 73 aa1.03□□□□□ -2.24
PCF11YDR228C GAL7P08431 366 aa1.03□□□□□ -2.25
PCF11YDR228C VPS1P21576 704 aaKnown RBP1.03□□□□□ -2.25
PCF11YDR228C TRM7P38238 310 aaKnown RBP1.03□□□□□ -2.25
PCF11YDR228C POP2P39008 433 aa1.03□□□□□ -2.25
PCF11YDR228C PRP39P39682 629 aaKnown RBP1.03□□□□□ -2.25
PCF11YDR228C OST3P48439 350 aa1.03□□□□□ -2.25
PCF11YDR228C ARC18Q05933 178 aaKnown RBP1.03□□□□□ -2.25
PCF11YDR228C DPM1P14020 267 aaKnown RBP1.02□□□□□ -2.25
PCF11YDR228C PES4P39684 611 aa1.02□□□□□ -2.25
PCF11YDR228C JEM1P40358 645 aa1.02□□□□□ -2.25
PCF11YDR228C RVB1Q03940 463 aaKnown RBP1.02□□□□□ -2.25
PCF11YDR228C DCR2Q05924 578 aa1.02□□□□□ -2.25
PCF11YDR228C YLR446WQ06204 433 aa1.02□□□□□ -2.25
PCF11YDR228C AGC1Q12482 902 aa1.02□□□□□ -2.25
PCF11YDR228C YCR025CP25352 136 aa1.01□□□□□ -2.25
PCF11YDR228C VMA5P31412 392 aaKnown RBP1.01□□□□□ -2.25
PCF11YDR228C MRPL6P32904 214 aa1.01□□□□□ -2.25
PCF11YDR228C YBR062CP38239 180 aa1.01□□□□□ -2.25
PCF11YDR228C YJR141WP47172 347 aaPredicted RBP1.01□□□□□ -2.25
PCF11YDR228C RSM27P53305 110 aa1.01□□□□□ -2.25
PCF11YDR228C ALG9P53868 555 aaKnown RBP1.01□□□□□ -2.25
PCF11YDR228C EOS1P53938 366 aa1.01□□□□□ -2.25
PCF11YDR228C FCF1Q05498 189 aaPredicted RBP1.01□□□□□ -2.25
PCF11YDR228C YDL144CQ07589 356 aa1.01□□□□□ -2.25
PCF11YDR228C YDR262WQ12331 272 aa1.01□□□□□ -2.25
PCF11YDR228C SPO24Q3E752 67 aa1.01□□□□□ -2.25
PCF11YDR228C ERD1P16151 362 aa1.01□□□□□ -2.25
PCF11YDR228C SCO1P23833 295 aa1.01□□□□□ -2.25
PCF11YDR228C RRT12P25381 491 aa1.01□□□□□ -2.25
PCF11YDR228C MCH2P36032 473 aa1.01□□□□□ -2.25
PCF11YDR228C MRPL3P36516 390 aa1.01□□□□□ -2.25
PCF11YDR228C RXT2P38255 430 aa1.01□□□□□ -2.25
PCF11YDR228C FCY21P40039 528 aa1.01□□□□□ -2.25
PCF11YDR228C DSK2P48510 373 aa1.01□□□□□ -2.25
PCF11YDR228C BIO4P53630 237 aa1.01□□□□□ -2.25
PCF11YDR228C YMR166CQ03829 368 aa1.01□□□□□ -2.25
PCF11YDR228C TVP15Q03860 143 aa1.01□□□□□ -2.25
PCF11YDR228C DBP9Q06218 594 aaKnown RBP1.01□□□□□ -2.25
PCF11YDR228C CTS2Q06350 511 aa1.01□□□□□ -2.25
PCF11YDR228C RDS3Q06835 107 aaPredicted RBP1.01□□□□□ -2.25
PCF11YDR228C DCP1Q12517 231 aaPredicted RBP1.01□□□□□ -2.25
PCF11YDR228C LAG2Q92325 660 aa1.01□□□□□ -2.25
PCF11YDR228C IFM1P25038 676 aa1□□□□□ -2.25
PCF11YDR228C VAB2P40003 282 aa1□□□□□ -2.25
PCF11YDR228C SNX41Q04053 625 aa1□□□□□ -2.25
PCF11YDR228C MYO5Q04439 1219 aaKnown RBP1□□□□□ -2.25
PCF11YDR228C TY3A-GQ12173 290 aa1□□□□□ -2.25
PCF11YDR228C ATG5Q12380 294 aa1□□□□□ -2.25
PCF11YDR228C FRE6Q12473 712 aa1□□□□□ -2.25
PCF11YDR228C TY3A-IQ99219 290 aa1□□□□□ -2.25
PCF11YDR228C MND1P53102 219 aa0.99□□□□□ -2.25
PCF11YDR228C YGR016WP53209 190 aa0.99□□□□□ -2.25
PCF11YDR228C YPL278CQ08990 100 aa0.99□□□□□ -2.25
PCF11YDR228C MBA1P38300 278 aa0.99□□□□□ -2.25
PCF11YDR228C YHR035WP38769 630 aa0.99□□□□□ -2.25
PCF11YDR228C SUR2P38992 349 aa0.99□□□□□ -2.25
PCF11YDR228C AVT6P40074 448 aa0.99□□□□□ -2.25
PCF11YDR228C INA22P40576 216 aa0.99□□□□□ -2.25
PCF11YDR228C PRP24P49960 444 aaKnown RBP0.99□□□□□ -2.25
PCF11YDR228C TPN1P53099 579 aa0.99□□□□□ -2.25
PCF11YDR228C YGL114WP53134 725 aa0.99□□□□□ -2.25
PCF11YDR228C IRC4Q03036 179 aa0.99□□□□□ -2.25
PCF11YDR228C NNT1Q05874 261 aa0.99□□□□□ -2.25
PCF11YDR228C SUE1Q06524 206 aa0.99□□□□□ -2.25
PCF11YDR228C CDC13P32797 924 aaKnown RBP0.98□□□□□ -2.25
PCF11YDR228C GRE3P38715 327 aaKnown RBP RIP-Chip data0.98□□□□□ -2.25not detected
PCF11YDR228C SPL2P38839 148 aa0.98□□□□□ -2.25
PCF11YDR228C CAJ1P39101 391 aa0.98□□□□□ -2.25
PCF11YDR228C OKP1P53298 406 aa0.98□□□□□ -2.25
PCF11YDR228C COS6P53344 381 aa0.98□□□□□ -2.25
PCF11YDR228C YNL146WP53906 100 aa0.98□□□□□ -2.25
PCF11YDR228C YOR268CQ08734 132 aa0.98□□□□□ -2.25
PCF11YDR228C TAL1P15019 335 aaKnown RBP0.97□□□□□ -2.25
PCF11YDR228C POT1P27796 417 aaKnown RBP RIP-Chip data0.97□□□□□ -2.25not detected
PCF11YDR228C IMP3P32899 183 aaPredicted RBP0.97□□□□□ -2.25
PCF11YDR228C COY1P34237 679 aa0.97□□□□□ -2.25
PCF11YDR228C TPO5P36029 618 aa0.97□□□□□ -2.25
PCF11YDR228C YIL012WP40551 113 aa0.97□□□□□ -2.25
PCF11YDR228C UBC13P52490 153 aa0.97□□□□□ -2.25
PCF11YDR228C GRH1Q04410 372 aaKnown RBP0.97□□□□□ -2.25
PCF11YDR228C SPO77Q06134 477 aa0.97□□□□□ -2.25
PCF11YDR228C RTC5Q12108 567 aaKnown RBP0.97□□□□□ -2.25
PCF11YDR228C UTP23Q12339 254 aaKnown RBP0.97□□□□□ -2.25
PCF11YDR228C ERP4Q12450 207 aa0.97□□□□□ -2.25
PCF11YDR228C LAS1P36146 502 aaPredicted RBP0.97□□□□□ -2.25
PCF11YDR228C YHR045WP38775 560 aa0.97□□□□□ -2.25
PCF11YDR228C LIN1P38852 340 aaPredicted RBP0.97□□□□□ -2.25
PCF11YDR228C YJL027CP47063 138 aaPredicted RBP0.97□□□□□ -2.25
PCF11YDR228C CAB4P53332 305 aa0.97□□□□□ -2.25
PCF11YDR228C YHR086W-AQ3E746 53 aa0.97□□□□□ -2.25
PCF11YDR228C OSM1P21375 501 aaKnown RBP0.96□□□□□ -2.26
PCF11YDR228C TOM40P23644 387 aaKnown RBP0.96□□□□□ -2.26
PCF11YDR228C IMP1P28627 190 aa0.96□□□□□ -2.26
PCF11YDR228C YPC1P38298 316 aa0.96□□□□□ -2.26
PCF11YDR228C COG3P40094 801 aa0.96□□□□□ -2.26
PCF11YDR228C SHQ1P40486 507 aaPredicted RBP0.96□□□□□ -2.26
PCF11YDR228C YPT32P51996 222 aaKnown RBP0.96□□□□□ -2.26
PCF11YDR228C BUR2Q05949 395 aa0.96□□□□□ -2.26
Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms