RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C RIB4P50861 169 aaPredicted RBP2.47□□□□□ -2.01
RUB1YDR139C SWC4P53201 476 aa2.47□□□□□ -2.01
RUB1YDR139C DBP6P53734 629 aaKnown RBP2.47□□□□□ -2.01
RUB1YDR139C YNL040WP53960 456 aaPredicted RBP2.47□□□□□ -2.01
RUB1YDR139C SGT2Q12118 346 aaKnown RBP2.47□□□□□ -2.01
RUB1YDR139C YPR063CQ12160 140 aa2.47□□□□□ -2.01
RUB1YDR139C RPS23AP0CX29 145 aaKnown RBP2.46□□□□□ -2.02
RUB1YDR139C RPS23BP0CX30 145 aa2.46□□□□□ -2.02
RUB1YDR139C SAR1P20606 190 aaKnown RBP2.46□□□□□ -2.02
RUB1YDR139C RPL5P26321 297 aaKnown RBP2.46□□□□□ -2.02
RUB1YDR139C ARO4P32449 370 aaKnown RBP2.46□□□□□ -2.02
RUB1YDR139C GPX1P36014 167 aa2.46□□□□□ -2.02
RUB1YDR139C MED8P38304 223 aa2.46□□□□□ -2.02
RUB1YDR139C OSW5P40219 148 aa2.46□□□□□ -2.02
RUB1YDR139C CDC40P40968 455 aaPredicted RBP2.46□□□□□ -2.02
RUB1YDR139C COX16P47081 118 aa2.46□□□□□ -2.02
RUB1YDR139C VOA1P53262 265 aa2.46□□□□□ -2.02
RUB1YDR139C YDR222WQ04925 415 aa2.46□□□□□ -2.02
RUB1YDR139C APC9Q12107 265 aa2.46□□□□□ -2.02
RUB1YDR139C YPR096CO13587 100 aa2.45□□□□□ -2.02
RUB1YDR139C DAL5P15365 543 aa2.45□□□□□ -2.02
RUB1YDR139C TPO5P36029 618 aa2.45□□□□□ -2.02
RUB1YDR139C YPC1P38298 316 aa2.45□□□□□ -2.02
RUB1YDR139C MNN9P39107 395 aaKnown RBP2.45□□□□□ -2.02
RUB1YDR139C BUD13P46947 266 aaPredicted RBP2.45□□□□□ -2.02
RUB1YDR139C YJL144WP47009 104 aa2.45□□□□□ -2.02
RUB1YDR139C UBC13P52490 153 aa2.45□□□□□ -2.02
RUB1YDR139C DIA1P54005 336 aa2.45□□□□□ -2.02
RUB1YDR139C GTO3Q04806 366 aa2.45□□□□□ -2.02
RUB1YDR139C ARC18Q05933 178 aaKnown RBP2.45□□□□□ -2.02
RUB1YDR139C CUR1Q06469 252 aa2.45□□□□□ -2.02
RUB1YDR139C IES3Q12345 250 aa2.45□□□□□ -2.02
RUB1YDR139C PFK27Q12471 397 aaPredicted RBP2.45□□□□□ -2.02
RUB1YDR139C RAD7P06779 565 aa2.44□□□□□ -2.02
RUB1YDR139C GCG1P32656 232 aaKnown RBP2.44□□□□□ -2.02
RUB1YDR139C CDC13P32797 924 aaKnown RBP2.44□□□□□ -2.02
RUB1YDR139C SWD2P36104 329 aaPredicted RBP2.44□□□□□ -2.02
RUB1YDR139C YFR045WP43617 309 aa2.44□□□□□ -2.02
RUB1YDR139C LIF1P53150 421 aa2.44□□□□□ -2.02
RUB1YDR139C BIO4P53630 237 aa2.44□□□□□ -2.02
RUB1YDR139C YMR111CQ04461 462 aaPredicted RBP2.44□□□□□ -2.02
RUB1YDR139C RRG8Q06109 277 aa2.44□□□□□ -2.02
RUB1YDR139C VAC14Q06708 880 aa2.44□□□□□ -2.02
RUB1YDR139C YPL278CQ08990 100 aa2.44□□□□□ -2.02
RUB1YDR139C SIA1Q12212 622 aa2.44□□□□□ -2.02
RUB1YDR139C RRP42Q12277 265 aaPredicted RBP2.44□□□□□ -2.02
RUB1YDR139C MDY2Q12285 212 aa2.44□□□□□ -2.02
RUB1YDR139C RPL31AP0C2H8 113 aaKnown RBP2.43□□□□□ -2.02
RUB1YDR139C DAL81P21657 970 aa2.43□□□□□ -2.02
RUB1YDR139C IMP3P32899 183 aaPredicted RBP2.43□□□□□ -2.02
RUB1YDR139C YBR062CP38239 180 aa2.43□□□□□ -2.02
RUB1YDR139C YFL064CP43540 174 aa2.43□□□□□ -2.02
RUB1YDR139C ECO1P43605 281 aa2.43□□□□□ -2.02
RUB1YDR139C UFD1P53044 361 aa2.43□□□□□ -2.02
RUB1YDR139C YPR064WQ12492 139 aa2.43□□□□□ -2.02
RUB1YDR139C CDC42P19073 191 aa2.42□□□□□ -2.02
RUB1YDR139C TKL2P33315 681 aa2.42□□□□□ -2.02
RUB1YDR139C SMC2P38989 1170 aaKnown RBP2.42□□□□□ -2.02
RUB1YDR139C VAB2P40003 282 aa2.42□□□□□ -2.02
RUB1YDR139C YIL012WP40551 113 aa2.42□□□□□ -2.02
RUB1YDR139C GDS1P41913 522 aa2.42□□□□□ -2.02
RUB1YDR139C LOC1P43586 204 aaPredicted RBP2.42□□□□□ -2.02
RUB1YDR139C HSH155P49955 971 aaKnown RBP2.42□□□□□ -2.02
RUB1YDR139C IGO1P53897 168 aa2.42□□□□□ -2.02
RUB1YDR139C YDR114CQ04597 100 aa2.42□□□□□ -2.02
RUB1YDR139C DXO1Q06349 442 aa2.42□□□□□ -2.02
RUB1YDR139C HRT1Q08273 121 aa2.42□□□□□ -2.02
RUB1YDR139C IMP1P28627 190 aa2.41□□□□□ -2.02
RUB1YDR139C ALK2P32789 676 aaPredicted RBP2.41□□□□□ -2.02
RUB1YDR139C RPC25P35718 212 aa2.41□□□□□ -2.02
RUB1YDR139C MRPL3P36516 390 aa2.41□□□□□ -2.02
RUB1YDR139C YHL044WP38727 235 aa2.41□□□□□ -2.02
RUB1YDR139C KRE29P40026 464 aa2.41□□□□□ -2.02
RUB1YDR139C MPP10P47083 593 aaKnown RBP2.41□□□□□ -2.02
RUB1YDR139C PRP24P49960 444 aaKnown RBP2.41□□□□□ -2.02
RUB1YDR139C YPL113CQ02961 396 aa2.41□□□□□ -2.02
RUB1YDR139C YAL063C-AQ3E791 96 aa2.41□□□□□ -2.02
RUB1YDR139C YAK1P14680 807 aa2.4□□□□□ -2.03
RUB1YDR139C VPS1P21576 704 aaKnown RBP2.4□□□□□ -2.03
RUB1YDR139C PRE7P23724 241 aaKnown RBP2.4□□□□□ -2.03
RUB1YDR139C YKL063CP35725 167 aa2.4□□□□□ -2.03
RUB1YDR139C KEL2P50090 882 aa2.4□□□□□ -2.03
RUB1YDR139C YPL077CQ02831 240 aa2.4□□□□□ -2.03
RUB1YDR139C PEX30Q06169 523 aa2.4□□□□□ -2.03
RUB1YDR139C RLP24Q07915 199 aaKnown RBP2.4□□□□□ -2.03
RUB1YDR139C MRX4Q12467 430 aa2.4□□□□□ -2.03
RUB1YDR139C MET2P08465 486 aa2.39□□□□□ -2.03
RUB1YDR139C YOL163WP0CF20 169 aa2.39□□□□□ -2.03
RUB1YDR139C YCR025CP25352 136 aa2.39□□□□□ -2.03
RUB1YDR139C RPC37P36121 282 aa2.39□□□□□ -2.03
RUB1YDR139C SDH4P37298 181 aa2.39□□□□□ -2.03
RUB1YDR139C GTO1P48239 356 aa2.39□□□□□ -2.03
RUB1YDR139C YPT32P51996 222 aaKnown RBP2.39□□□□□ -2.03
RUB1YDR139C YGL088WP53151 121 aa2.39□□□□□ -2.03
RUB1YDR139C ATP6P00854 259 aa2.38□□□□□ -2.03
RUB1YDR139C PHO80P20052 293 aa2.38□□□□□ -2.03
RUB1YDR139C GPI12P23797 304 aa2.38□□□□□ -2.03
RUB1YDR139C MIG1P27705 504 aa2.38□□□□□ -2.03
RUB1YDR139C AEP1P32493 518 aa2.38□□□□□ -2.03
RUB1YDR139C MBA1P38300 278 aa2.38□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms