RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 BICD1Q96G01 975 aa12.29□□□□□ -0.44
USP3-218ENST00000560202 NOC4LQ9BVI4 516 aaKnown RBP12.29□□□□□ -0.44
USP3-218ENST00000560202 HTTP42858 3142 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 SMIM35A0A1B0GVV1 85 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 LGALS16A8MUM7 142 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 HNRNPDLO14979 420 aaKnown RBP12.28□□□□□ -0.44
USP3-218ENST00000560202 EXOC3O60645 756 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 VTNP04004 478 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 EPB41P11171 864 aaKnown RBP12.28□□□□□ -0.44
USP3-218ENST00000560202 CYP2C9P11712 490 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 ADSSP30520 456 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 HOXC8P31273 242 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 PSMC2P35998 433 aaKnown RBP12.28□□□□□ -0.44
USP3-218ENST00000560202 PTENP60484 403 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 MAN2A1Q16706 1144 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 NBPF20Q3BBV1 942 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 MIIPQ5JXC2 388 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 ARMCX5Q6P1M9 558 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 SLC39A4Q6P5W5 647 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 FRMD5Q7Z6J6 570 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 ZNF668Q96K58 619 aaPredicted RBP12.28□□□□□ -0.44
USP3-218ENST00000560202 CBWD1Q9BRT8 395 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 MKNK1Q9BUB5 465 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 NFKBIZQ9BYH8 718 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 CCDC113Q9H0I3 377 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 PCIF1Q9H4Z3 704 aa12.28□□□□□ -0.44
USP3-218ENST00000560202 A0A087WZ62 844 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 PES1O00541 588 aaKnown RBP12.27□□□□□ -0.45
USP3-218ENST00000560202 TREHO43280 583 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 PIGRP01833 764 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 PHKA2P46019 1235 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 LIG4P49917 911 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 ZNF200P98182 395 aaPredicted RBP12.27□□□□□ -0.45
USP3-218ENST00000560202 UBXN1Q04323 297 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 MAPK6Q16659 721 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 PTPN21Q16825 1174 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 VWA3BQ502W6 1294 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 RUFY4Q6ZNE9 571 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 TMC6Q7Z403 805 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 VSTM4Q8IW00 320 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 TRIM59Q8IWR1 403 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 FAM186BQ8IYM0 893 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 XXYLT1Q8NBI6 393 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 FDXACB1Q9BRP7 624 aaPredicted RBP12.27□□□□□ -0.45
USP3-218ENST00000560202 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.27□□□□□ -0.45
USP3-218ENST00000560202 FAM49AQ9H0Q0 323 aaPredicted RBP12.27□□□□□ -0.45
USP3-218ENST00000560202 IFT122Q9HBG6 1241 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 METTL14Q9HCE5 456 aaKnown RBP12.27□□□□□ -0.45
USP3-218ENST00000560202 HSPBP1Q9NZL4 362 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 ARMCX3Q9UH62 379 aaPredicted RBP12.27□□□□□ -0.45
USP3-218ENST00000560202 USP20Q9Y2K6 914 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 FRMD4BQ9Y2L6 1034 aa12.27□□□□□ -0.45
USP3-218ENST00000560202 CEP350Q5VT06 3117 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 GOLGA6L6A8MZA4 724 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 INO80B-WBP1J3KQ70 363 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 CABYRO75952 493 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 EDN1P05305 212 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 PRKCBP05771 671 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 PTMAP06454 111 aaKnown RBP12.26□□□□□ -0.45
USP3-218ENST00000560202 GARTP22102 1010 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 PBX1P40424 430 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 GPC3P51654 580 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 ACLYP53396 1101 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 CDC42EP1Q00587 391 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 MBTD1Q05BQ5 628 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 ZPBP2Q6X784 338 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 IFNLR1Q8IU57 520 aaPredicted RBP12.26□□□□□ -0.45
USP3-218ENST00000560202 NLRP7Q8WX94 980 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 POMGNT1Q8WZA1 660 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 BORCS6Q96GS4 357 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 PPP1R16BQ96T49 567 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 TARS2Q9BW92 718 aaKnown RBP12.26□□□□□ -0.45
USP3-218ENST00000560202 MRPL4Q9BYD3 311 aaKnown RBP12.26□□□□□ -0.45
USP3-218ENST00000560202 INO80BQ9C086 356 aaPredicted RBP12.26□□□□□ -0.45
USP3-218ENST00000560202 NDST4Q9H3R1 872 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 FZD8Q9H461 694 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 GTF2IRD1Q9UHL9 959 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.26□□□□□ -0.45
USP3-218ENST00000560202 CENPFP49454 3210 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 MOXD2PA6NHM9 499 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 ACKR2O00590 384 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 NLRP11P59045 1033 aaKnown RBP12.26□□□□□ -0.45
USP3-218ENST00000560202 SLC9C1Q4G0N8 1177 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 FAM47CQ5HY64 1035 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 SPECC1LQ69YQ0 1117 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 SLFN12LQ6IEE8 588 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 ZNF410Q86VK4 478 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 SESTD1Q86VW0 696 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 RDH13Q8NBN7 331 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 DNAJB3Q8WWF6 145 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 SCLT1Q96NL6 688 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 TSEN34Q9BSV6 310 aaKnown RBP12.26□□□□□ -0.45
USP3-218ENST00000560202 UNC93B1Q9H1C4 597 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 MINDY3Q9H8M7 445 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 IMPACTQ9P2X3 320 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 ZKSCAN5Q9Y2L8 839 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 STYXL1Q9Y6J8 313 aa12.26□□□□□ -0.45
USP3-218ENST00000560202 TTLL13PA6NNM8 815 aa12.25□□□□□ -0.45
USP3-218ENST00000560202 IQCF3P0C7M6 154 aa12.25□□□□□ -0.45
USP3-218ENST00000560202 PPP2R3AQ06190 1150 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms