RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W YDL176WQ12027 708 aa12.71□□□□□ -0.37
DEP1YAL013W MED2Q12124 431 aa12.71□□□□□ -0.37
DEP1YAL013W YOL114CQ12322 202 aa12.71□□□□□ -0.37
DEP1YAL013W DCP1Q12517 231 aaPredicted RBP12.71□□□□□ -0.37
DEP1YAL013W YOR032W-AQ8TGS1 66 aa12.71□□□□□ -0.37
DEP1YAL013W RPB8P20436 146 aa12.7□□□□□ -0.38
DEP1YAL013W EHD3P28817 500 aa12.7□□□□□ -0.38
DEP1YAL013W MDH3P32419 343 aaKnown RBP RIP-Chip data12.7□□□□□ -0.38not detected
DEP1YAL013W SEF1P34228 1148 aa12.7□□□□□ -0.38
DEP1YAL013W RSM10Q03201 203 aa12.7□□□□□ -0.38
DEP1YAL013W CGI121Q03705 181 aaKnown RBP12.7□□□□□ -0.38
DEP1YAL013W HRT1Q08273 121 aa12.7□□□□□ -0.38
DEP1YAL013W YOR343CQ12484 108 aa12.7□□□□□ -0.38
DEP1YAL013W PRE7P23724 241 aaKnown RBP12.69□□□□□ -0.38
DEP1YAL013W SBA1P28707 216 aaKnown RBP12.69□□□□□ -0.38
DEP1YAL013W PAD1P33751 242 aaKnown RBP RIP-Chip data12.69□□□□□ -0.38not detected
DEP1YAL013W YKR073CP36153 106 aa12.69□□□□□ -0.38
DEP1YAL013W MLH1P38920 769 aa12.69□□□□□ -0.38
DEP1YAL013W YER158CP40095 573 aa12.69□□□□□ -0.38
DEP1YAL013W GDS1P41913 522 aa12.69□□□□□ -0.38
DEP1YAL013W PGU1P47180 361 aa12.69□□□□□ -0.38
DEP1YAL013W FDC1Q03034 503 aa12.69□□□□□ -0.38
DEP1YAL013W PFA5Q03289 374 aa12.69□□□□□ -0.38
DEP1YAL013W SNX41Q04053 625 aa12.69□□□□□ -0.38
DEP1YAL013W IPK1Q06667 281 aa12.69□□□□□ -0.38
DEP1YAL013W NGL1Q08213 363 aaKnown RBP12.69□□□□□ -0.38
DEP1YAL013W SOG2Q08817 791 aa12.69□□□□□ -0.38
DEP1YAL013W RPP2BP02400 110 aaKnown RBP12.68□□□□□ -0.38
DEP1YAL013W AIM17P23180 465 aaKnown RBP12.68□□□□□ -0.38
DEP1YAL013W LDB16P25587 256 aa12.68□□□□□ -0.38
DEP1YAL013W FUN19P28003 413 aaPredicted RBP12.68□□□□□ -0.38
DEP1YAL013W DTR1P38125 572 aa12.68□□□□□ -0.38
DEP1YAL013W FET3P38993 636 aa12.68□□□□□ -0.38
DEP1YAL013W FMC1P40491 155 aa12.68□□□□□ -0.38
DEP1YAL013W RPE1P46969 238 aa12.68□□□□□ -0.38
DEP1YAL013W YDR249CQ03787 373 aa12.68□□□□□ -0.38
DEP1YAL013W TEL1P38110 2787 aa12.67□□□□□ -0.38
DEP1YAL013W NFT1P0CE68 1218 aa12.67□□□□□ -0.38
DEP1YAL013W PUB1P32588 453 aaKnown RBP RIP-Chip data12.67□□□□□ -0.38not detected
DEP1YAL013W THI2P38141 450 aa12.67□□□□□ -0.38
DEP1YAL013W OM14P38325 134 aa12.67□□□□□ -0.38
DEP1YAL013W VBA2P38358 474 aaKnown RBP12.67□□□□□ -0.38
DEP1YAL013W YIL165CP40446 119 aa12.67□□□□□ -0.38
DEP1YAL013W OGG1P53397 376 aaPredicted RBP12.67□□□□□ -0.38
DEP1YAL013W FRE6Q12473 712 aa12.67□□□□□ -0.38
DEP1YAL013W YEL009C-AA0A023PZF2 135 aa12.66□□□□□ -0.38
DEP1YAL013W YGL041W-AP0C5N3 154 aa12.66□□□□□ -0.38
DEP1YAL013W HMG1P12683 1054 aa12.66□□□□□ -0.38
DEP1YAL013W GAS1P22146 559 aaKnown RBP12.66□□□□□ -0.38
DEP1YAL013W RAD51P25454 400 aa12.66□□□□□ -0.38
DEP1YAL013W CHK1P38147 527 aa12.66□□□□□ -0.38
DEP1YAL013W SFH5P47008 294 aa12.66□□□□□ -0.38
DEP1YAL013W SAM37P50110 327 aa12.66□□□□□ -0.38
DEP1YAL013W PPT1P53043 513 aa12.66□□□□□ -0.38
DEP1YAL013W PAU12P53343 120 aa12.66□□□□□ -0.38
DEP1YAL013W ERF2Q06551 359 aa12.66□□□□□ -0.38
DEP1YAL013W IRC19Q07843 230 aa12.66□□□□□ -0.38
DEP1YAL013W RPN13O13563 156 aa12.65□□□□□ -0.38
DEP1YAL013W RPA135P22138 1203 aaKnown RBP12.65□□□□□ -0.38
DEP1YAL013W FCY21P40039 528 aa12.65□□□□□ -0.38
DEP1YAL013W SER3P40054 469 aa12.65□□□□□ -0.38
DEP1YAL013W ECL1P48235 211 aa12.65□□□□□ -0.38
DEP1YAL013W IMO32P53219 342 aa12.65□□□□□ -0.38
DEP1YAL013W SCS7Q03529 384 aa12.65□□□□□ -0.38
DEP1YAL013W YDR514CQ04408 483 aa12.65□□□□□ -0.38
DEP1YAL013W RRP9Q06506 573 aaKnown RBP12.65□□□□□ -0.38
DEP1YAL013W GRE1Q08969 168 aa12.65□□□□□ -0.38
DEP1YAL013W SWM1Q12379 170 aa12.65□□□□□ -0.38
DEP1YAL013W TY1A-NL1Q12391 440 aaKnown RBP12.65□□□□□ -0.38
DEP1YAL013W KIN28P06242 306 aa12.64□□□□□ -0.39
DEP1YAL013W PEP4P07267 405 aaKnown RBP12.64□□□□□ -0.39
DEP1YAL013W ZRT3P34240 503 aa12.64□□□□□ -0.39
DEP1YAL013W RSM22P36056 628 aa12.64□□□□□ -0.39
DEP1YAL013W YBR063CP38083 404 aa12.64□□□□□ -0.39
DEP1YAL013W YER184CP39961 794 aa12.64□□□□□ -0.39
DEP1YAL013W YER010CP40011 234 aa12.64□□□□□ -0.39
DEP1YAL013W NAS2P40555 220 aa12.64□□□□□ -0.39
DEP1YAL013W BPL1P48445 690 aaPredicted RBP12.64□□□□□ -0.39
DEP1YAL013W RAI1P53063 387 aaKnown RBP12.64□□□□□ -0.39
DEP1YAL013W NUP53Q03790 475 aa12.64□□□□□ -0.39
DEP1YAL013W GIS1Q03833 894 aa12.64□□□□□ -0.39
DEP1YAL013W COX20Q04935 205 aa12.64□□□□□ -0.39
DEP1YAL013W MRPL51Q06090 140 aaPredicted RBP12.64□□□□□ -0.39
DEP1YAL013W YPR109WQ06104 294 aa12.64□□□□□ -0.39
DEP1YAL013W SIR2P06700 562 aa12.63□□□□□ -0.39
DEP1YAL013W AHC2P25649 128 aa12.63□□□□□ -0.39
DEP1YAL013W CPR3P25719 182 aa12.63□□□□□ -0.39
DEP1YAL013W PAU24P38155 120 aa12.63□□□□□ -0.39
DEP1YAL013W PMT6P42934 759 aa12.63□□□□□ -0.39
DEP1YAL013W IKS1P47042 667 aa12.63□□□□□ -0.39
DEP1YAL013W YDR209CQ03480 137 aa12.63□□□□□ -0.39
DEP1YAL013W HLR1Q04429 423 aa12.63□□□□□ -0.39
DEP1YAL013W RCN2Q12044 265 aa12.63□□□□□ -0.39
DEP1YAL013W PDE2P06776 526 aa12.62□□□□□ -0.39
DEP1YAL013W EXG1P23776 448 aaKnown RBP12.62□□□□□ -0.39
DEP1YAL013W NAM9P27929 486 aa12.62□□□□□ -0.39
DEP1YAL013W SDS22P36047 338 aa12.62□□□□□ -0.39
DEP1YAL013W GRE3P38715 327 aaKnown RBP RIP-Chip data12.62□□□□□ -0.39not detected
DEP1YAL013W YHK8P38776 514 aa12.62□□□□□ -0.39
DEP1YAL013W PHO90P39535 881 aa12.62□□□□□ -0.39
Retrieved 100 of 5,963 RNA–protein pairs in 22.2 ms