RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 MMRN2Q9H8L6 949 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 EHMT1Q9H9B1 1298 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 UBN1Q9NPG3 1134 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 SDHAF3Q9NRP4 125 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 INIPQ9NRY2 104 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 TBCCD1Q9NVR7 557 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.55□□□□□ -1.52
COL3A1-205ENST00000470167 TRPM5Q9NZQ8 1165 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 EMC3Q9P0I2 261 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 MBD2Q9UBB5 411 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 MYO1AQ9UBC5 1043 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 DDX20Q9UHI6 824 aaKnown RBP5.55□□□□□ -1.52
COL3A1-205ENST00000470167 RASAL2Q9UJF2 1139 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 AGTPBP1Q9UPW5 1226 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 ASB3Q9Y575 518 aa5.55□□□□□ -1.52
COL3A1-205ENST00000470167 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.55□□□□□ -1.52
COL3A1-205ENST00000470167 FAM221AA4D161 298 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 SLC35F4A4IF30 521 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 EREGO14944 169 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 KHNYNO15037 678 aaKnown RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 ATXN7O15265 892 aaPredicted RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 SLC7A4O43246 635 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 XPOTO43592 962 aaKnown RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 URI1O94763 535 aaPredicted RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 LUC7L3O95232 432 aaKnown RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 NPPAP01160 153 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 POLR3DP05423 398 aaPredicted RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 KRT4P19013 534 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 RXRAP19793 462 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 CFL1P23528 166 aaKnown RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 AXLP30530 894 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 LSP1P33241 339 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 GALNSP34059 522 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 KRT9P35527 623 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 TRIM23P36406 574 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 ATP6V1E1P36543 226 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 LIFRP42702 1097 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 HTR3AP46098 478 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 ARHGDIBP52566 201 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 EPHB1P54762 984 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 MTTPP55157 894 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 BPIFB4P59827 614 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 SSTP61278 116 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 OLR1P78380 273 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 PRKG1Q13976 671 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 LAPTM4AQ15012 233 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 WDR43Q15061 677 aaKnown RBP eCLIP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 CLUL1Q15846 466 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 MOGQ16653 247 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 MYLK3Q32MK0 819 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 TBC1D9BQ66K14 1250 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 TRIM68Q6AZZ1 485 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 ZNF704Q6ZNC4 412 aaPredicted RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 KRT25Q7Z3Z0 450 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 FAM83AQ86UY5 434 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 CAMKK1Q8N5S9 505 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 C1orf127Q8N9H9 656 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 C7orf57Q8NEG2 295 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 SUPT20HQ8NEM7 779 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 MGARPQ8TDB4 240 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 DQX1Q8TE96 717 aaKnown RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 CCDC74AQ96AQ1 378 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 FAM149B1Q96BN6 582 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 BTBD6Q96KE9 485 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 FAM20AQ96MK3 541 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 SRPK1Q96SB4 655 aaKnown RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 TPK1Q9H3S4 243 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 UCK1Q9HA47 277 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 ZFYVE28Q9HCC9 887 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 NPHS2Q9NP85 383 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 DMAP1Q9NPF5 467 aaPredicted RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 SH2B1Q9NRF2 756 aaPredicted RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 DDX18Q9NVP1 670 aaKnown RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 SLC39A1Q9NY26 324 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 ABI2Q9NYB9 513 aaPredicted RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 EHD2Q9NZN4 543 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 VPS18Q9P253 973 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 DDX19BQ9UMR2 479 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 COG5Q9UP83 839 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 TMEM5Q9Y2B1 443 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 EXOC6BQ9Y2D4 811 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 TMX2Q9Y320 296 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 MTF2Q9Y483 593 aaPredicted RBP5.54□□□□□ -1.52
COL3A1-205ENST00000470167 PCDHB6Q9Y5E3 794 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 FADS3Q9Y5Q0 445 aa5.54□□□□□ -1.52
COL3A1-205ENST00000470167 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.53□□□□□ -1.52
COL3A1-205ENST00000470167 ERVV-2B6SEH9 535 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 H0Y626 953 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 ENC1O14682 589 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 TRDMT1O14717 391 aaKnown RBP5.53□□□□□ -1.52
COL3A1-205ENST00000470167 MAPK13O15264 365 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 EFSO43281 561 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 NCK2O43639 380 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 ACSL4O60488 711 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 USO1O60763 962 aaKnown RBP5.53□□□□□ -1.52
COL3A1-205ENST00000470167 RASSF9O75901 435 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 FKBP9O95302 570 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 TGDSO95455 350 aa5.53□□□□□ -1.52
COL3A1-205ENST00000470167 CNOT4O95628 575 aaKnown RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms