RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 AEBP2Q6ZN18 517 aaPredicted RBP14.66□□□□□ -0.06
COL3A1-205ENST00000470167 CHIC1Q5VXU3 224 aa14.61□□□□□ -0.07
COL3A1-205ENST00000470167 PHF23Q9BUL5 403 aaPredicted RBP12.92□□□□□ -0.34
COL3A1-205ENST00000470167 SENP3Q9H4L4 574 aaPredicted RBP12.33□□□□□ -0.44
COL3A1-205ENST00000470167 PLPPR3Q6T4P5 718 aa12.01□□□□□ -0.49
COL3A1-205ENST00000470167 FOXD1Q16676 465 aa11.44□□□□□ -0.58
COL3A1-205ENST00000470167 ADRA2BP18089 450 aa11.3□□□□□ -0.6
COL3A1-205ENST00000470167 PPP6R1Q9UPN7 881 aa11.29□□□□□ -0.6
COL3A1-205ENST00000470167 POTEDQ86YR6 584 aa10.88□□□□□ -0.67
COL3A1-205ENST00000470167 PIAS4Q8N2W9 510 aaPredicted RBP10.88□□□□□ -0.67
COL3A1-205ENST00000470167 KCNA4P22459 653 aa10.82□□□□□ -0.68
COL3A1-205ENST00000470167 MSH5O43196 834 aa10.69□□□□□ -0.7
COL3A1-205ENST00000470167 PPP4R3CPQ6ZMV5 832 aa10.64□□□□□ -0.71
COL3A1-205ENST00000470167 EHMT2Q96KQ7 1210 aa10.51□□□□□ -0.73
COL3A1-205ENST00000470167 NCBP3Q53F19 620 aaKnown RBP10.42□□□□□ -0.74
COL3A1-205ENST00000470167 SLC4A1APQ9BWU0 796 aaKnown RBP10.35□□□□□ -0.75
COL3A1-205ENST00000470167 NPM3O75607 178 aaKnown RBP10.33□□□□□ -0.76
COL3A1-205ENST00000470167 SCAF1Q9H7N4 1312 aaKnown RBP10.26□□□□□ -0.77
COL3A1-205ENST00000470167 CNKSR2Q8WXI2 1034 aa10.24□□□□□ -0.77
COL3A1-205ENST00000470167 CSRNP3Q8WYN3 585 aa10.18□□□□□ -0.78
COL3A1-205ENST00000470167 MAPK8IP2Q13387 824 aaPredicted RBP10.16□□□□□ -0.78
COL3A1-205ENST00000470167 ZBTB22O15209 634 aa9.98□□□□□ -0.81
COL3A1-205ENST00000470167 RNF216Q9NWF9 866 aaPredicted RBP9.96□□□□□ -0.82
COL3A1-205ENST00000470167 DMRT2Q9Y5R5 561 aa9.91□□□□□ -0.82
COL3A1-205ENST00000470167 DNAJC5BQ9UF47 199 aa9.89□□□□□ -0.83
COL3A1-205ENST00000470167 HOXD11P31277 338 aaPredicted RBP9.83□□□□□ -0.84
COL3A1-205ENST00000470167 FOXD4L1Q9NU39 408 aa9.83□□□□□ -0.84
COL3A1-205ENST00000470167 SLC24A1O60721 1099 aa9.69□□□□□ -0.86
COL3A1-205ENST00000470167 SLC4A2P04920 1241 aa9.67□□□□□ -0.86
COL3A1-205ENST00000470167 MYT1Q01538 1121 aa9.65□□□□□ -0.86
COL3A1-205ENST00000470167 PELP1Q8IZL8 1130 aaKnown RBP9.57□□□□□ -0.88
COL3A1-205ENST00000470167 TTBK1Q5TCY1 1321 aaPredicted RBP9.53□□□□□ -0.88
COL3A1-205ENST00000470167 MYCNP04198 464 aaPredicted RBP9.51□□□□□ -0.89
COL3A1-205ENST00000470167 DCAF8L1A6NGE4 600 aa9.5□□□□□ -0.89
COL3A1-205ENST00000470167 ATXN8OSP0DMR3 200 aa9.41□□□□□ -0.9
COL3A1-205ENST00000470167 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.38□□□□□ -0.91
COL3A1-205ENST00000470167 CACNB1Q02641 598 aaPredicted RBP9.29□□□□□ -0.92
COL3A1-205ENST00000470167 U3KPZ7 1027 aaPredicted RBP9.29□□□□□ -0.92
COL3A1-205ENST00000470167 ATF5Q9Y2D1 282 aaPredicted RBP9.28□□□□□ -0.92
COL3A1-205ENST00000470167 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.23□□□□□ -0.93
COL3A1-205ENST00000470167 HNRNPUL2Q1KMD3 747 aaKnown RBP9.23□□□□□ -0.93
COL3A1-205ENST00000470167 SAMD1Q6SPF0 538 aaPredicted RBP9.23□□□□□ -0.93
COL3A1-205ENST00000470167 FKBP8Q14318 412 aa9.2□□□□□ -0.94
COL3A1-205ENST00000470167 APLP2Q06481 763 aa9.14□□□□□ -0.95
COL3A1-205ENST00000470167 DAXXQ9UER7 740 aaPredicted RBP9.12□□□□□ -0.95
COL3A1-205ENST00000470167 RNF39Q9H2S5 420 aa9.09□□□□□ -0.95
COL3A1-205ENST00000470167 PRKCSHP14314 528 aaPredicted RBP9.06□□□□□ -0.96
COL3A1-205ENST00000470167 ERICH6Q7L0X2 663 aa9.06□□□□□ -0.96
COL3A1-205ENST00000470167 ZNF219Q9P2Y4 722 aaPredicted RBP9.05□□□□□ -0.96
COL3A1-205ENST00000470167 RTN4Q9NQC3 1192 aaKnown RBP8.99□□□□□ -0.97
COL3A1-205ENST00000470167 C1QBPQ07021 282 aaKnown RBP8.96□□□□□ -0.98
COL3A1-205ENST00000470167 AMER1Q5JTC6 1135 aaPredicted RBP8.95□□□□□ -0.98
COL3A1-205ENST00000470167 SPINK5Q9NQ38 1064 aaPredicted RBP8.95□□□□□ -0.98
COL3A1-205ENST00000470167 TRHP20396 242 aaPredicted RBP8.92□□□□□ -0.98
COL3A1-205ENST00000470167 CAPN15O75808 1086 aa8.88□□□□□ -0.99
COL3A1-205ENST00000470167 MKRN4PQ13434 485 aaPredicted RBP8.88□□□□□ -0.99
COL3A1-205ENST00000470167 SPDYE4A6NLX3 237 aa8.83□□□□□ -1
COL3A1-205ENST00000470167 POLA2Q14181 598 aa8.83□□□□□ -1
COL3A1-205ENST00000470167 FBLN2P98095 1184 aa8.81□□□□□ -1
COL3A1-205ENST00000470167 ABCB7O75027 752 aa8.76□□□□□ -1.01
COL3A1-205ENST00000470167 PROM2Q8N271 834 aa8.72□□□□□ -1.01
COL3A1-205ENST00000470167 FBXO3Q9UK99 471 aa8.7□□□□□ -1.02
COL3A1-205ENST00000470167 ZBTB12Q9Y330 459 aaPredicted RBP8.67□□□□□ -1.02
COL3A1-205ENST00000470167 DSG3P32926 999 aa8.63□□□□□ -1.03
COL3A1-205ENST00000470167 VASPP50552 380 aaPredicted RBP8.62□□□□□ -1.03
COL3A1-205ENST00000470167 OSCARQ8IYS5 282 aa8.56□□□□□ -1.04
COL3A1-205ENST00000470167 IFNLR1Q8IU57 520 aaPredicted RBP8.54□□□□□ -1.04
COL3A1-205ENST00000470167 ZNF692Q9BU19 519 aaPredicted RBP8.52□□□□□ -1.05
COL3A1-205ENST00000470167 SPDYE2BA6NHP3 402 aa8.48□□□□□ -1.05
COL3A1-205ENST00000470167 SPDYE6P0CI01 402 aa8.48□□□□□ -1.05
COL3A1-205ENST00000470167 SPDYE2Q495Y8 402 aa8.48□□□□□ -1.05
COL3A1-205ENST00000470167 ARXQ96QS3 562 aa8.48□□□□□ -1.05
COL3A1-205ENST00000470167 SSUH2Q9Y2M2 353 aa8.48□□□□□ -1.05
COL3A1-205ENST00000470167 EIF5BO60841 1220 aaKnown RBP8.46□□□□□ -1.06
COL3A1-205ENST00000470167 BCL11AQ9H165 835 aa8.45□□□□□ -1.06
COL3A1-205ENST00000470167 PABPN1Q86U42 306 aaKnown RBP eCLIP8.44□□□□□ -1.06
COL3A1-205ENST00000470167 PKD2Q13563 968 aa8.39□□□□□ -1.07
COL3A1-205ENST00000470167 KLHL34Q8N239 644 aa8.39□□□□□ -1.07
COL3A1-205ENST00000470167 STAG3Q9UJ98 1225 aa8.39□□□□□ -1.07
COL3A1-205ENST00000470167 DCAF8L2P0C7V8 631 aa8.37□□□□□ -1.07
COL3A1-205ENST00000470167 SPOCK2Q92563 424 aa8.36□□□□□ -1.07
COL3A1-205ENST00000470167 PLCD3Q8N3E9 789 aa8.35□□□□□ -1.07
COL3A1-205ENST00000470167 MIER1Q8N108 512 aa8.32□□□□□ -1.08
COL3A1-205ENST00000470167 POTEHQ6S545 545 aa8.31□□□□□ -1.08
COL3A1-205ENST00000470167 RANGAP1P46060 587 aaPredicted RBP8.28□□□□□ -1.08
COL3A1-205ENST00000470167 PLCB2Q00722 1185 aa8.28□□□□□ -1.08
COL3A1-205ENST00000470167 ECM2O94769 699 aaPredicted RBP8.27□□□□□ -1.09
COL3A1-205ENST00000470167 FAM9AQ8IZU1 332 aaPredicted RBP8.27□□□□□ -1.09
COL3A1-205ENST00000470167 PLEKHG5O94827 1062 aa8.22□□□□□ -1.09
COL3A1-205ENST00000470167 RGL2O15211 777 aa8.2□□□□□ -1.1
COL3A1-205ENST00000470167 ZBTB47Q9UFB7 747 aaPredicted RBP8.2□□□□□ -1.1
COL3A1-205ENST00000470167 HAP1P54257 671 aaPredicted RBP8.19□□□□□ -1.1
COL3A1-205ENST00000470167 CIZ1Q9ULV3 898 aaPredicted RBP8.19□□□□□ -1.1
COL3A1-205ENST00000470167 RBM42Q9BTD8 480 aaKnown RBP8.18□□□□□ -1.1
COL3A1-205ENST00000470167 NPM1P06748 294 aaKnown RBP eCLIP8.16□□□□□ -1.1
COL3A1-205ENST00000470167 SPDYE1Q8NFV5 336 aaPredicted RBP8.16□□□□□ -1.1
COL3A1-205ENST00000470167 AKT1S1Q96B36 256 aa8.16□□□□□ -1.1
COL3A1-205ENST00000470167 TIMELESSQ9UNS1 1208 aa8.16□□□□□ -1.1
COL3A1-205ENST00000470167 CLEC11AQ9Y240 323 aa8.14□□□□□ -1.11
COL3A1-205ENST00000470167 HOMEZQ8IX15 550 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms