RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 DTX3Q8N9I9 347 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 WDR48Q8TAF3 677 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 SSH1Q8WYL5 1049 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 RPGRQ92834 1020 aaKnown RBP5.51□□□□□ -1.53
BRCA1-204ENST00000412061 TMEM209Q96SK2 561 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 DIRC2Q96SL1 478 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 NUP88Q99567 741 aaPredicted RBP5.51□□□□□ -1.53
BRCA1-204ENST00000412061 SELENOOQ9BVL4 669 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 AMNQ9BXJ7 453 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 NAA15Q9BXJ9 866 aaKnown RBP5.51□□□□□ -1.53
BRCA1-204ENST00000412061 NSUN3Q9H649 340 aaKnown RBP5.51□□□□□ -1.53
BRCA1-204ENST00000412061 CNTD2Q9H8S5 307 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 DCP1AQ9NPI6 582 aaPredicted RBP5.51□□□□□ -1.53
BRCA1-204ENST00000412061 JADE2Q9NQC1 790 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 C1orf112Q9NSG2 853 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 RBPJLQ9UBG7 517 aa5.51□□□□□ -1.53
BRCA1-204ENST00000412061 ABHD14A-ACY1A0A1B0GW23 586 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 PRSS38A1L453 326 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 CCER2I3L3R5 266 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 AP1G1O43747 822 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 PCDHGA12O60330 932 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 MTHFD2P13995 350 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 TYRP1P17643 537 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 THBS2P35442 1172 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 MC3RP41968 323 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 ECE1P42892 770 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 RGS3P49796 1198 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 USP14P54578 494 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 BCAR1P56945 870 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 HTRA3P83110 453 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 BIRC3Q13489 604 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 ACAP2Q15057 778 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.5□□□□□ -1.53
BRCA1-204ENST00000412061 SKIDA1Q1XH10 827 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 IFIT1BQ5T764 474 aaKnown RBP5.5□□□□□ -1.53
BRCA1-204ENST00000412061 TMEM132EQ6IEE7 984 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 ZNF280DQ6N043 979 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 KANSL1Q7Z3B3 1105 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 B3GNT8Q7Z7M8 397 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 ACRBPQ8NEB7 543 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 SMARCC2Q8TAQ2 1214 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 SLC35G2Q8TBE7 412 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 EAF2Q96CJ1 260 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-204ENST00000412061 RAX2Q96IS3 184 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 BTBD2Q9BX70 525 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 QRSL1Q9H0R6 528 aaKnown RBP5.5□□□□□ -1.53
BRCA1-204ENST00000412061 NMRK2Q9NPI5 230 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 ARHGAP20Q9P2F6 1191 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 MBD1Q9UIS9 605 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-204ENST00000412061 DNM3Q9UQ16 869 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 INVSQ9Y283 1065 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 PCDHGA9Q9Y5G4 932 aaKnown RBP5.5□□□□□ -1.53
BRCA1-204ENST00000412061 PCDHGA8Q9Y5G5 932 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 PCDHGA7Q9Y5G6 932 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 PCDHGA6Q9Y5G7 932 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 PCDHGA3Q9Y5H0 932 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 PCDHGA2Q9Y5H1 932 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 PCDHA5Q9Y5H7 936 aa5.5□□□□□ -1.53
BRCA1-204ENST00000412061 ARID1BQ8NFD5 2236 aaPredicted RBP5.5□□□□□ -1.53
BRCA1-204ENST00000412061 TEX51A0A1B0GUA7 166 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 MYOCOSA0A1B0GUC4 107 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 PRRT4C9JH25 899 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 SRGNP10124 158 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 PTMSP20962 102 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 APEX1P27695 318 aaKnown RBP5.49□□□□□ -1.53
BRCA1-204ENST00000412061 RENBPP51606 427 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 CDR1P51861 262 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 NCKAP1LP55160 1127 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 MRPS9P82933 396 aaKnown RBP5.49□□□□□ -1.53
BRCA1-204ENST00000412061 SRSF2Q01130 221 aaKnown RBP5.49□□□□□ -1.53
BRCA1-204ENST00000412061 KRT72Q14CN4 511 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 LONRF1Q17RB8 773 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 PITRM1Q5JRX3 1037 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 TOR2AQ5JU69 321 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 LRSAM1Q6UWE0 723 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 MMS22LQ6ZRQ5 1243 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 PRR23BQ6ZRT6 265 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 CHST15Q7LFX5 561 aaPredicted RBP5.49□□□□□ -1.53
BRCA1-204ENST00000412061 CATIPQ7Z7H3 387 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 POF1BQ8WVV4 589 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 ATXN2LQ8WWM7 1075 aaKnown RBP5.49□□□□□ -1.53
BRCA1-204ENST00000412061 RSAD2Q8WXG1 361 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 WRNIP1Q96S55 665 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 KRTAP4-9Q9BYQ8 210 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 MCOLN1Q9GZU1 580 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 OR10A5Q9H207 317 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 EDARQ9UNE0 448 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 WASF3Q9UPY6 502 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 GPR45Q9Y5Y3 372 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 NUMBLQ9Y6R0 609 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 CARMIL2Q6F5E8 1435 aa5.49□□□□□ -1.53
BRCA1-204ENST00000412061 SEMA7AO75326 666 aa5.48□□□□□ -1.53
BRCA1-204ENST00000412061 LPLP06858 475 aa5.48□□□□□ -1.53
BRCA1-204ENST00000412061 MYBP10242 640 aa5.48□□□□□ -1.53
BRCA1-204ENST00000412061 ATF2P15336 505 aa5.48□□□□□ -1.53
BRCA1-204ENST00000412061 RHCEP18577 417 aa5.48□□□□□ -1.53
BRCA1-204ENST00000412061 AGXTP21549 392 aa5.48□□□□□ -1.53
BRCA1-204ENST00000412061 MTNR1BP49286 362 aa5.48□□□□□ -1.53
BRCA1-204ENST00000412061 ALDH5A1P51649 535 aaPredicted RBP5.48□□□□□ -1.53
BRCA1-204ENST00000412061 ITGA1P56199 1179 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms