RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 AEBP2Q6ZN18 517 aaPredicted RBP20.42■□□□□ 0.86
BRCA1-204ENST00000412061 CHIC1Q5VXU3 224 aa19.15■□□□□ 0.66
BRCA1-204ENST00000412061 SENP3Q9H4L4 574 aaPredicted RBP17.35■□□□□ 0.37
BRCA1-204ENST00000412061 PHF23Q9BUL5 403 aaPredicted RBP17.14■□□□□ 0.33
BRCA1-204ENST00000412061 FOXD1Q16676 465 aa16.26■□□□□ 0.19
BRCA1-204ENST00000412061 POTEDQ86YR6 584 aa15.24■□□□□ 0.03
BRCA1-204ENST00000412061 MSH5O43196 834 aa15.21■□□□□ 0.03
BRCA1-204ENST00000412061 PLPPR3Q6T4P5 718 aa15.17■□□□□ 0.02
BRCA1-204ENST00000412061 PIAS4Q8N2W9 510 aaPredicted RBP15.12■□□□□ 0.01
BRCA1-204ENST00000412061 PPP6R1Q9UPN7 881 aa15.09■□□□□ 0.01
BRCA1-204ENST00000412061 ADRA2BP18089 450 aa15.01□□□□□ -0.01
BRCA1-204ENST00000412061 MAPK8IP2Q13387 824 aaPredicted RBP13.87□□□□□ -0.19
BRCA1-204ENST00000412061 DMRT2Q9Y5R5 561 aa13.76□□□□□ -0.21
BRCA1-204ENST00000412061 SCAF1Q9H7N4 1312 aaKnown RBP13.61□□□□□ -0.23
BRCA1-204ENST00000412061 KCNA4P22459 653 aa13.4□□□□□ -0.26
BRCA1-204ENST00000412061 PPP4R3CPQ6ZMV5 832 aa13.33□□□□□ -0.28
BRCA1-204ENST00000412061 DCAF8L1A6NGE4 600 aa13.2□□□□□ -0.3
BRCA1-204ENST00000412061 CACNB1Q02641 598 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-204ENST00000412061 HOXD11P31277 338 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-204ENST00000412061 NCBP3Q53F19 620 aaKnown RBP13.12□□□□□ -0.31
BRCA1-204ENST00000412061 CNKSR2Q8WXI2 1034 aa13.07□□□□□ -0.32
BRCA1-204ENST00000412061 RNF39Q9H2S5 420 aa13.01□□□□□ -0.33
BRCA1-204ENST00000412061 RNF216Q9NWF9 866 aaPredicted RBP13.01□□□□□ -0.33
BRCA1-204ENST00000412061 EHMT2Q96KQ7 1210 aa12.9□□□□□ -0.34
BRCA1-204ENST00000412061 NPM3O75607 178 aaKnown RBP12.88□□□□□ -0.35
BRCA1-204ENST00000412061 SLC4A1APQ9BWU0 796 aaKnown RBP12.87□□□□□ -0.35
BRCA1-204ENST00000412061 C1QBPQ07021 282 aaKnown RBP12.76□□□□□ -0.37
BRCA1-204ENST00000412061 DNAJC5BQ9UF47 199 aa12.69□□□□□ -0.38
BRCA1-204ENST00000412061 CSRNP3Q8WYN3 585 aa12.58□□□□□ -0.4
BRCA1-204ENST00000412061 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.54□□□□□ -0.47e-7■■□□□ 12.5
BRCA1-204ENST00000412061 ZBTB22O15209 634 aa12.34□□□□□ -0.43
BRCA1-204ENST00000412061 U3KPZ7 1027 aaPredicted RBP12.31□□□□□ -0.44
BRCA1-204ENST00000412061 FOXD4L1Q9NU39 408 aa12.27□□□□□ -0.45
BRCA1-204ENST00000412061 SPINK5Q9NQ38 1064 aaPredicted RBP12.2□□□□□ -0.46
BRCA1-204ENST00000412061 CAPN15O75808 1086 aa12.12□□□□□ -0.47
BRCA1-204ENST00000412061 DSG3P32926 999 aa12.12□□□□□ -0.47
BRCA1-204ENST00000412061 SLC4A2P04920 1241 aa12.09□□□□□ -0.47
BRCA1-204ENST00000412061 MYCNP04198 464 aaPredicted RBP11.91□□□□□ -0.5
BRCA1-204ENST00000412061 TRHP20396 242 aaPredicted RBP11.9□□□□□ -0.5
BRCA1-204ENST00000412061 ABCB7O75027 752 aa11.88□□□□□ -0.51
BRCA1-204ENST00000412061 POTEHQ6S545 545 aa11.88□□□□□ -0.51
BRCA1-204ENST00000412061 ATXN8OSP0DMR3 200 aa11.82□□□□□ -0.52
BRCA1-204ENST00000412061 ZNF219Q9P2Y4 722 aaPredicted RBP11.82□□□□□ -0.52
BRCA1-204ENST00000412061 APLP2Q06481 763 aa11.8□□□□□ -0.52
BRCA1-204ENST00000412061 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.77□□□□□ -0.53
BRCA1-204ENST00000412061 HNRNPUL2Q1KMD3 747 aaKnown RBP11.77□□□□□ -0.53
BRCA1-204ENST00000412061 SAMD1Q6SPF0 538 aaPredicted RBP11.73□□□□□ -0.53
BRCA1-204ENST00000412061 POLA2Q14181 598 aa11.54□□□□□ -0.56
BRCA1-204ENST00000412061 ATF5Q9Y2D1 282 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-204ENST00000412061 RBM42Q9BTD8 480 aaKnown RBP11.5□□□□□ -0.57
BRCA1-204ENST00000412061 CHRDL2Q6WN34 429 aa11.37□□□□□ -0.59
BRCA1-204ENST00000412061 FKBP8Q14318 412 aa11.36□□□□□ -0.59
BRCA1-204ENST00000412061 AKT1S1Q96B36 256 aa11.22□□□□□ -0.61
BRCA1-204ENST00000412061 ZBTB12Q9Y330 459 aaPredicted RBP11.21□□□□□ -0.61
BRCA1-204ENST00000412061 OSCARQ8IYS5 282 aa11.2□□□□□ -0.62
BRCA1-204ENST00000412061 REM2Q8IYK8 340 aaPredicted RBP11.15□□□□□ -0.62
BRCA1-204ENST00000412061 PIP4P2Q8N4L2 257 aa11.09□□□□□ -0.63
BRCA1-204ENST00000412061 FBLN2P98095 1184 aa11.08□□□□□ -0.64
BRCA1-204ENST00000412061 PITPNM1O00562 1244 aa11.06□□□□□ -0.64
BRCA1-204ENST00000412061 MKRN4PQ13434 485 aaPredicted RBP11.05□□□□□ -0.64
BRCA1-204ENST00000412061 SP7Q8TDD2 431 aaPredicted RBP11.05□□□□□ -0.64
BRCA1-204ENST00000412061 AMER1Q5JTC6 1135 aaPredicted RBP11.03□□□□□ -0.64
BRCA1-204ENST00000412061 SPDYE4A6NLX3 237 aa11.01□□□□□ -0.65
BRCA1-204ENST00000412061 FXR2P51116 673 aaKnown RBP eCLIP10.98□□□□□ -0.65
BRCA1-204ENST00000412061 RTN4Q9NQC3 1192 aaKnown RBP10.97□□□□□ -0.65
BRCA1-204ENST00000412061 HAX1O00165 279 aa10.91□□□□□ -0.66
BRCA1-204ENST00000412061 FBXO3Q9UK99 471 aa10.89□□□□□ -0.67
BRCA1-204ENST00000412061 SPDYE2BA6NHP3 402 aa10.88□□□□□ -0.67
BRCA1-204ENST00000412061 SPDYE6P0CI01 402 aa10.88□□□□□ -0.67
BRCA1-204ENST00000412061 SPDYE2Q495Y8 402 aa10.88□□□□□ -0.67
BRCA1-204ENST00000412061 PROM2Q8N271 834 aa10.86□□□□□ -0.67
BRCA1-204ENST00000412061 EVX2Q03828 476 aa10.84□□□□□ -0.67
BRCA1-204ENST00000412061 CLEC11AQ9Y240 323 aa10.77□□□□□ -0.69
BRCA1-204ENST00000412061 SSUH2Q9Y2M2 353 aa10.76□□□□□ -0.69
BRCA1-204ENST00000412061 PRKAR2AP13861 404 aaKnown RBP10.75□□□□□ -0.69
BRCA1-204ENST00000412061 SPDYE1Q8NFV5 336 aaPredicted RBP10.74□□□□□ -0.69
BRCA1-204ENST00000412061 ZNF692Q9BU19 519 aaPredicted RBP10.74□□□□□ -0.69
BRCA1-204ENST00000412061 VASPP50552 380 aaPredicted RBP10.71□□□□□ -0.69
BRCA1-204ENST00000412061 C19orf67A6NJJ6 358 aa10.63□□□□□ -0.71
BRCA1-204ENST00000412061 CHADLQ6NUI6 762 aa10.63□□□□□ -0.71
BRCA1-204ENST00000412061 PABPN1Q86U42 306 aaKnown RBP eCLIP10.59□□□□□ -0.71
BRCA1-204ENST00000412061 IFNLR1Q8IU57 520 aaPredicted RBP10.58□□□□□ -0.72
BRCA1-204ENST00000412061 STAG3Q9UJ98 1225 aa10.56□□□□□ -0.72
BRCA1-204ENST00000412061 SLC24A1O60721 1099 aa10.55□□□□□ -0.72
BRCA1-204ENST00000412061 PRR29P0C7W0 189 aa10.54□□□□□ -0.72
BRCA1-204ENST00000412061 GABBR2O75899 941 aa10.53□□□□□ -0.72
BRCA1-204ENST00000412061 KLHL34Q8N239 644 aa10.45□□□□□ -0.74
BRCA1-204ENST00000412061 PLCD3Q8N3E9 789 aa10.44□□□□□ -0.74
BRCA1-204ENST00000412061 SPOCK2Q92563 424 aa10.41□□□□□ -0.74
BRCA1-204ENST00000412061 MIER1Q8N108 512 aa10.4□□□□□ -0.74
BRCA1-204ENST00000412061 FARP1Q9Y4F1 1045 aaPredicted RBP10.4□□□□□ -0.74
BRCA1-204ENST00000412061 CD44P16070 742 aaKnown RBP10.39□□□□□ -0.75
BRCA1-204ENST00000412061 PLEKHG5O94827 1062 aa10.36□□□□□ -0.75
BRCA1-204ENST00000412061 POTEIP0CG38 1075 aa10.35□□□□□ -0.75
BRCA1-204ENST00000412061 PKD2Q13563 968 aa10.35□□□□□ -0.75
BRCA1-204ENST00000412061 LHX8Q68G74 356 aa10.35□□□□□ -0.75
BRCA1-204ENST00000412061 ZBTB47Q9UFB7 747 aaPredicted RBP10.33□□□□□ -0.76
BRCA1-204ENST00000412061 DCAF8L2P0C7V8 631 aa10.31□□□□□ -0.76
BRCA1-204ENST00000412061 CREBZFQ9NS37 354 aa10.28□□□□□ -0.76
BRCA1-204ENST00000412061 ECM2O94769 699 aaPredicted RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms