RNA–Protein interactions for RNA: YER151C

UBP3, Transcript of Ubiquitin-specific protease involved in transport and osmotic response, yeast

Gene UBP3, Length 2,739 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP3	YER151C	HSP33	Q08914	237 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	HSP32	Q08992	237 aa		0.85	□□□□□ -2.27
UBP3	YER151C	ATG29	Q12092	213 aa		0.85	□□□□□ -2.27
UBP3	YER151C	AGC1	Q12482	902 aa		0.85	□□□□□ -2.27
UBP3	YER151C	JIP3	O13555	125 aa		0.85	□□□□□ -2.27
UBP3	YER151C	YPR096C	O13587	100 aa		0.85	□□□□□ -2.27
UBP3	YER151C	CDC28	P00546	298 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	STE3	P06783	470 aa		0.85	□□□□□ -2.27
UBP3	YER151C	CPA1	P07258	411 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	RPS23A	P0CX29	145 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	RPS23B	P0CX30	145 aa		0.85	□□□□□ -2.27
UBP3	YER151C	AAC3	P18238	307 aa		0.85	□□□□□ -2.27
UBP3	YER151C	CDC42	P19073	191 aa		0.85	□□□□□ -2.27
UBP3	YER151C	RPI1	P23250	407 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	RNA14	P25298	677 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	OCA4	P25366	362 aa		0.85	□□□□□ -2.27
UBP3	YER151C	YCR101C	P25607	182 aa		0.85	□□□□□ -2.27
UBP3	YER151C	MSK1	P32048	576 aa		0.85	□□□□□ -2.27
UBP3	YER151C	TRS65	P32893	560 aa		0.85	□□□□□ -2.27
UBP3	YER151C	RPS1A	P33442	255 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	GPX1	P36014	167 aa		0.85	□□□□□ -2.27
UBP3	YER151C	YKT6	P36015	200 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	AGP2	P38090	596 aa		0.85	□□□□□ -2.27
UBP3	YER151C	AVT5	P38176	459 aa		0.85	□□□□□ -2.27
UBP3	YER151C	SOP4	P39543	234 aa	Predicted RBP	0.85	□□□□□ -2.27
UBP3	YER151C	RBG1	P39729	369 aa		0.85	□□□□□ -2.27
UBP3	YER151C	RMD6	P39975	231 aa		0.85	□□□□□ -2.27
UBP3	YER151C	HAT2	P39984	401 aa		0.85	□□□□□ -2.27
UBP3	YER151C	RTS2	P40962	232 aa		0.85	□□□□□ -2.27
UBP3	YER151C	IKS1	P47042	667 aa		0.85	□□□□□ -2.27
UBP3	YER151C	PRP24	P49960	444 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	GIR2	Q03768	265 aa	Predicted RBP	0.85	□□□□□ -2.27
UBP3	YER151C	SWF1	Q04629	336 aa		0.85	□□□□□ -2.27
UBP3	YER151C	YPR022C	Q12139	1133 aa		0.85	□□□□□ -2.27
UBP3	YER151C	RIO1	Q12196	484 aa	Known RBP	0.85	□□□□□ -2.27
UBP3	YER151C	CAR1	P00812	333 aa	Known RBP	0.84	□□□□□ -2.27
UBP3	YER151C	HIP1	P06775	603 aa		0.84	□□□□□ -2.27
UBP3	YER151C	IMA3	P0CW40	589 aa		0.84	□□□□□ -2.27
UBP3	YER151C	IMA4	P0CW41	589 aa		0.84	□□□□□ -2.27
UBP3	YER151C	MRP2	P10663	115 aa	Predicted RBP	0.84	□□□□□ -2.27
UBP3	YER151C	NSP1	P14907	823 aa	Known RBP	0.84	□□□□□ -2.27
UBP3	YER151C	SAC1	P32368	623 aa	Known RBP	0.84	□□□□□ -2.27
UBP3	YER151C	HXT1	P32465	570 aa		0.84	□□□□□ -2.27
UBP3	YER151C	MRPS5	P33759	307 aa		0.84	□□□□□ -2.27
UBP3	YER151C	NUP120	P35729	1037 aa		0.84	□□□□□ -2.27
UBP3	YER151C	SRY1	P36007	326 aa		0.84	□□□□□ -2.27
UBP3	YER151C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.84	□□□□□ -2.27	not detected
UBP3	YER151C	RTC3	P38804	111 aa	Predicted RBP	0.84	□□□□□ -2.27
UBP3	YER151C	AGE2	P40529	298 aa		0.84	□□□□□ -2.27
UBP3	YER151C	RPS7B	P48164	190 aa	Known RBP	0.84	□□□□□ -2.27
UBP3	YER151C	YGL235W	P53071	178 aa		0.84	□□□□□ -2.27
UBP3	YER151C	YIP5	P53108	310 aa		0.84	□□□□□ -2.27
UBP3	YER151C	SHY1	P53266	389 aa		0.84	□□□□□ -2.27
UBP3	YER151C	LSM3	P57743	89 aa	Known RBP	0.84	□□□□□ -2.27
UBP3	YER151C	YPL039W	Q03080	316 aa		0.84	□□□□□ -2.27
UBP3	YER151C	YDR387C	Q04162	555 aa		0.84	□□□□□ -2.27
UBP3	YER151C	YKU80	Q04437	629 aa		0.84	□□□□□ -2.27
UBP3	YER151C	FMP42	Q04991	504 aa		0.84	□□□□□ -2.27
UBP3	YER151C	YLR446W	Q06204	433 aa		0.84	□□□□□ -2.27
UBP3	YER151C	YPR091C	Q06833	770 aa		0.84	□□□□□ -2.27
UBP3	YER151C	RFU1	Q08003	200 aa		0.84	□□□□□ -2.27
UBP3	YER151C	IMA2	Q08295	589 aa		0.84	□□□□□ -2.27
UBP3	YER151C	YLR108C	Q12259	485 aa		0.84	□□□□□ -2.27
UBP3	YER151C	AVL9	Q12500	764 aa		0.84	□□□□□ -2.27
UBP3	YER151C	YBL111C	Q3E7Y5	667 aa		0.84	□□□□□ -2.27
UBP3	YER151C	ARG81	P05085	880 aa		0.84	□□□□□ -2.28
UBP3	YER151C	ATP10	P18496	279 aa		0.84	□□□□□ -2.28
UBP3	YER151C	RPB8	P20436	146 aa		0.84	□□□□□ -2.28
UBP3	YER151C	RAD24	P32641	659 aa		0.84	□□□□□ -2.28
UBP3	YER151C	ALY1	P36117	915 aa		0.84	□□□□□ -2.28
UBP3	YER151C	CYC2	P38909	366 aa		0.84	□□□□□ -2.28
UBP3	YER151C	YER010C	P40011	234 aa		0.84	□□□□□ -2.28
UBP3	YER151C	YER084W	P40057	128 aa		0.84	□□□□□ -2.28
UBP3	YER151C	PAN6	P40459	309 aa		0.84	□□□□□ -2.28
UBP3	YER151C	YCH1	P42937	148 aa		0.84	□□□□□ -2.28
UBP3	YER151C	SAD1	P43589	448 aa		0.84	□□□□□ -2.28
UBP3	YER151C	UFD1	P53044	361 aa		0.84	□□□□□ -2.28
UBP3	YER151C	MAL13	P53338	473 aa		0.84	□□□□□ -2.28
UBP3	YER151C	PAP2	P53632	584 aa	Known RBP	0.84	□□□□□ -2.28
UBP3	YER151C	KTR5	P53966	522 aa	Predicted RBP	0.84	□□□□□ -2.28
UBP3	YER151C	SPG3	Q04398	127 aa	Predicted RBP	0.84	□□□□□ -2.28
UBP3	YER151C	YPR063C	Q12160	140 aa		0.84	□□□□□ -2.28
UBP3	YER151C	YLR046C	Q12253	270 aa		0.84	□□□□□ -2.28
UBP3	YER151C	SCM3	Q12334	223 aa		0.84	□□□□□ -2.28
UBP3	YER151C	MRPL23	Q12487	163 aa	Predicted RBP	0.84	□□□□□ -2.28
UBP3	YER151C	NAG1	Q8TGN9	163 aa		0.84	□□□□□ -2.28
UBP3	YER151C	SLH1	P53327	1967 aa	Known RBP	0.84	□□□□□ -2.28
UBP3	YER151C	SAM1	P10659	382 aa	Known RBP	0.83	□□□□□ -2.28
UBP3	YER151C	NAM2	P11325	894 aa		0.83	□□□□□ -2.28
UBP3	YER151C	MRP13	P12686	339 aa		0.83	□□□□□ -2.28
UBP3	YER151C	PDX1	P16451	410 aa		0.83	□□□□□ -2.28
UBP3	YER151C	EPT1	P22140	391 aa		0.83	□□□□□ -2.28
UBP3	YER151C	GEX1	P25596	615 aa		0.83	□□□□□ -2.28
UBP3	YER151C	ERG1	P32476	496 aa	Known RBP	0.83	□□□□□ -2.28
UBP3	YER151C	IES6	P32617	166 aa		0.83	□□□□□ -2.28
UBP3	YER151C	YEF1	P32622	495 aa		0.83	□□□□□ -2.28
UBP3	YER151C	ECM15	P35195	104 aa		0.83	□□□□□ -2.28
UBP3	YER151C	YKL063C	P35725	167 aa		0.83	□□□□□ -2.28
UBP3	YER151C	YPK3	P38070	525 aa		0.83	□□□□□ -2.28
UBP3	YER151C	BZZ1	P38822	633 aa		0.83	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 17.2 ms