RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 KLC1Q07866 573 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 LAMB3Q13751 1172 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 INF2Q27J81 1249 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 CAVIN4Q5BKX8 364 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 TRIM68Q6AZZ1 485 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 MFSD5Q6N075 450 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 KIF2BQ8N4N8 673 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 FAM133AQ8N9E0 248 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 CFAP61Q8NHU2 1237 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 RTFDC1Q9BY42 306 aaPredicted RBP11.69□□□□□ -0.54
UPF3A-212ENST00000619079 PCDHA6Q9UN73 950 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 DAAM1Q9Y4D1 1078 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 ASB3Q9Y575 518 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 PCDHA8Q9Y5H6 950 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 MYH1P12882 1939 aa11.69□□□□□ -0.54
UPF3A-212ENST00000619079 SPDYE3A6NKU9 549 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 BAG3O95817 575 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 ACADSP16219 412 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 CYP7A1P22680 504 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 KLRK1P26718 216 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 EPS15P42566 896 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 ARID5AQ03989 594 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 DOK7Q18PE1 504 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 TNFAIP8L3Q5GJ75 292 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 ANO7Q6IWH7 933 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 FAM43BQ6ZT52 329 aaPredicted RBP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 BICD1Q96G01 975 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 RUNDC3BQ96NL0 473 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 CELF4Q9BZC1 486 aaKnown RBP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 ROPN1BQ9BZX4 212 aaPredicted RBP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 DBNDD1Q9H9R9 158 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 ROPN1Q9HAT0 212 aaPredicted RBP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 KLHL14Q9P2G3 628 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 STXBP5LQ9Y2K9 1186 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 ARFGEF1Q9Y6D6 1849 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 A8MUI8 341 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 UNC5CO95185 931 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 GNAQP50148 359 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 MARSP56192 900 aaKnown RBP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 IFI35P80217 286 aaPredicted RBP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 KLRC3Q07444 240 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 DYNC1I2Q13409 638 aaKnown RBP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 SNX1Q13596 522 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 PLS1Q14651 629 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 C9orf131Q5VYM1 1079 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 NIM1KQ8IY84 436 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 MYOCDQ8IZQ8 938 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 AGGF1Q8N302 714 aaeCLIP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 SH3TC2Q8TF17 1288 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 SDR42E1Q8WUS8 393 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 HPS3Q969F9 1004 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 GRAMD1AQ96CP6 724 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 HES6Q96HZ4 224 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 LRRC4CQ9HCJ2 640 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 NAGPAQ9UK23 515 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 RPL26L1Q9UNX3 145 aaKnown RBP11.68□□□□□ -0.54
UPF3A-212ENST00000619079 LTBP3Q9NS15 1303 aa11.68□□□□□ -0.54
UPF3A-212ENST00000619079 LRRC37AA6NMS7 1700 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 RASGRF2O14827 1237 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 ADAMTS3O15072 1205 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 FGGP02679 453 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 GSTA2P09210 222 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 GYG1P46976 350 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 PTK2Q05397 1052 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 SLC29A2Q14542 456 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 RNF43Q68DV7 783 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 ALKBH5Q6P6C2 394 aaKnown RBP11.67□□□□□ -0.54
UPF3A-212ENST00000619079 KRT25Q7Z3Z0 450 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 SDCCAG8Q86SQ7 713 aaPredicted RBP11.67□□□□□ -0.54
UPF3A-212ENST00000619079 TXNRD3Q86VQ6 643 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.67□□□□□ -0.54
UPF3A-212ENST00000619079 RASGRP4Q8TDF6 673 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 STK32AQ8WU08 396 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 RNF25Q96BH1 459 aaPredicted RBP11.67□□□□□ -0.54
UPF3A-212ENST00000619079 TRAPPC9Q96Q05 1148 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 TRIM51Q9BSJ1 452 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 TRIM31Q9BZY9 425 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 TRIM4Q9C037 500 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 FGFR1OP2Q9NVK5 253 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 AMFRQ9UKV5 643 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 SNED1Q8TER0 1413 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 TCP11X1B4DZS4 312 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 H2AFZP0C0S5 128 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 NT5C2P49902 561 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 CUL3Q13618 768 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 ACVR2BQ13705 512 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 KIAA1755Q5JYT7 1200 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 H2AFVQ71UI9 128 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 ZNF804AQ7Z570 1209 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 NT5DC3Q86UY8 548 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 PIGOQ8TEQ8 1089 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 LARP4BQ92615 738 aaKnown RBP11.67□□□□□ -0.54
UPF3A-212ENST00000619079 PAIP2Q9BPZ3 127 aaKnown RBP11.67□□□□□ -0.54
UPF3A-212ENST00000619079 GANQ9H2C0 597 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 ETNK1Q9HBU6 452 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 CYP39A1Q9NYL5 469 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 WDR35Q9P2L0 1181 aa11.67□□□□□ -0.54
UPF3A-212ENST00000619079 MYH4Q9Y623 1939 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms