RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GIT2Q14161 759 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 LONRF2Q1L5Z9 754 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 USH1GQ495M9 461 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 ARSHQ5FYA8 562 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 WDR93Q6P2C0 686 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 POTEGQ6S5H5 508 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 RRAGAQ7L523 313 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 FRMD5Q7Z6J6 570 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 FAM160B2Q86V87 743 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 GJA10Q969M2 543 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 TUFT1Q9NNX1 390 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 HOMER2Q9NSB8 354 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.22■□□□□ 0.19
USP4-203ENST00000415188 TARSL2A2RTX5 802 aaKnown RBP16.22■□□□□ 0.19
USP4-203ENST00000415188 FAM86B1E9PN63 330 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 RBAK-RBAKDNI3L0D1 243 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 OPLAHO14841 1288 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 MSH4O15457 936 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 AKR1B10O60218 316 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 SEC31AO94979 1220 aaKnown RBP16.22■□□□□ 0.19
USP4-203ENST00000415188 PGK1P00558 417 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 FAM86B2P0C5J1 330 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 EIF4A3P38919 411 aaKnown RBP16.22■□□□□ 0.19
USP4-203ENST00000415188 ADCYAP1R1P41586 468 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 SNAP25P60880 206 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 TERF2Q15554 542 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 EPM2AIP1Q7L775 607 aaPredicted RBP16.22■□□□□ 0.19
USP4-203ENST00000415188 CCDC155Q8N6L0 562 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 GLIS3Q8NEA6 775 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 RUBCNQ92622 972 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 FGD4Q96M96 766 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 ALS2CR12Q96Q35 445 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 FUT8Q9BYC5 575 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 UBE2OQ9C0C9 1292 aaKnown RBP16.22■□□□□ 0.19
USP4-203ENST00000415188 LACRTQ9GZZ8 138 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 RANBP17Q9H2T7 1088 aaKnown RBP16.22■□□□□ 0.19
USP4-203ENST00000415188 ZSWIM4Q9H7M6 989 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 XPNPEP3Q9NQH7 507 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 ATP11BQ9Y2G3 1177 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 MRPL11Q9Y3B7 192 aaKnown RBP16.22■□□□□ 0.19
USP4-203ENST00000415188 JRKLQ9Y4A0 524 aa16.22■□□□□ 0.19
USP4-203ENST00000415188 SMCHD1A6NHR9 2005 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 UBE4BO95155 1302 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 PDXKO00764 312 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 MAP2K7O14733 419 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 EPHB6O15197 1021 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 SLC16A3O15427 465 aaKnown RBP16.21■□□□□ 0.19
USP4-203ENST00000415188 SNAI1O95863 264 aaPredicted RBP16.21■□□□□ 0.19
USP4-203ENST00000415188 ATP1A1P05023 1023 aaKnown RBP16.21■□□□□ 0.19
USP4-203ENST00000415188 SERPING1P05155 500 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 RARBP10826 455 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 OAZ1P54368 228 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 ITIH3Q06033 890 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 KCNMA1Q12791 1236 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 GPS2Q13227 327 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 ASTE1Q2TB18 679 aaPredicted RBP16.21■□□□□ 0.19
USP4-203ENST00000415188 SFMBT2Q5VUG0 894 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 SLC39A5Q6ZMH5 540 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 HDXQ7Z353 690 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 ANKRD35Q8N283 1001 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 RNF10Q8N5U6 811 aaKnown RBP16.21■□□□□ 0.19
USP4-203ENST00000415188 AGBL1Q96MI9 1066 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 EPC1Q9H2F5 836 aa16.21■□□□□ 0.19
USP4-203ENST00000415188 METTL14Q9HCE5 456 aaKnown RBP16.21■□□□□ 0.19
USP4-203ENST00000415188 ZNF536O15090 1300 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 IGLV3-22A0A075B6J6 115 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 RCCD1A6NED2 376 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 GCOM1H8Y6P7 765 aaPredicted RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 ZNF263O14978 683 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 NKRFO15226 690 aaKnown RBP eCLIP16.2■□□□□ 0.18
USP4-203ENST00000415188 EIF3DO15371 548 aaKnown RBP eCLIP16.2■□□□□ 0.18
USP4-203ENST00000415188 TBCAO75347 108 aaKnown RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 POLR2MP0CAP2 368 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 AKR1A1P14550 325 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 RPL13P26373 211 aaKnown RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 PPP2R5CQ13362 524 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 ADAM9Q13443 819 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 NFIL3Q16649 462 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 KNOP1Q1ED39 458 aaKnown RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 TRIM60Q495X7 471 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 BEND6Q5SZJ8 279 aaPredicted RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 MAMDC4Q6UXC1 1216 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.2■□□□□ 0.18
USP4-203ENST00000415188 ZNF572Q7Z3I7 529 aaPredicted RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 NELFCDQ8IXH7 590 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 CHST13Q8NET6 341 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 EIF2AK1Q9BQI3 630 aaKnown RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 LSM14BQ9BX40 385 aaKnown RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 PLCB1Q9NQ66 1216 aa16.2■□□□□ 0.18
USP4-203ENST00000415188 TYW1Q9NV66 732 aaKnown RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 ZHX1Q9UKY1 873 aaPredicted RBP16.2■□□□□ 0.18
USP4-203ENST00000415188 ATP8B3O60423 1300 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 SYNGAP1Q96PV0 1343 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 NPHP3-ACAD11A0A0J9YXS1 232 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 EIF3JO75822 258 aaKnown RBP16.19■□□□□ 0.18
USP4-203ENST00000415188 ANXA13P27216 316 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 MAGEA1P43355 309 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 SETQ01105 290 aaPredicted RBP16.19■□□□□ 0.18
USP4-203ENST00000415188 CYP27A1Q02318 531 aa16.19■□□□□ 0.18
USP4-203ENST00000415188 MAP9Q49MG5 647 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 138.4 ms