RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 PLCD3Q8N3E9 789 aa8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 RNF149Q8NC42 400 aa8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 RNF169Q8NCN4 708 aa8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 PSPC1Q8WXF1 523 aaKnown RBP8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 MMTAG2Q9BU76 263 aaKnown RBP8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 GCOM2Q9BZD3 368 aaPredicted RBP8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 POLR3FQ9H1D9 316 aaPredicted RBP8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 IFT122Q9HBG6 1241 aa8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 RGS18Q9NS28 235 aa8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 DDX19AQ9NUU7 478 aaKnown RBP8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 KIAA1024Q9UPX6 916 aa8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 INSL6Q9Y581 213 aa8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 UNC80Q8N2C7 3258 aa8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 ADGRA3Q8IWK6 1321 aa8.54□□□□□ -1.04
HMGB3P1-201ENST00000393368 MYH9P35579 1960 aaKnown RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PRUNE2Q8WUY3 3088 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 KAT6AQ92794 2004 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 WDR81Q562E7 1941 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 ARID2Q68CP9 1835 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 ARHGEF35A5YM69 484 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 C9IYK1 514 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 LAD1O00515 517 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 STX6O43752 255 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 LPXNO60711 386 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 DGAT1O75907 488 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 DGKIO75912 1065 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 HSP90AA1P07900 732 aaKnown RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PDCP20941 246 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 GLRA2P23416 452 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 ARL2P36404 184 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PRPHP41219 470 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 SARSP49591 514 aaKnown RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 GRB10Q13322 594 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PKP1Q13835 747 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 CAPSQ13938 189 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 BTG3Q14201 252 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 FOXD4L6Q3SYB3 417 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 SPECC1Q5M775 1068 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 KRT79Q5XKE5 535 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PADI6Q6TGC4 694 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 FOXD4L3Q6VB84 417 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 CATSPER4Q7RTX7 472 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 ZNF410Q86VK4 478 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 NPAS4Q8IUM7 802 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 FIBCD1Q8N539 461 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 MAFAQ8NHW3 353 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 LRRC15Q8TF66 581 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 TCP11Q8WWU5 503 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 BSNDQ8WZ55 320 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 ZNF689Q96CS4 500 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PNMA5Q96PV4 448 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 NACC1Q96RE7 527 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 TGS1Q96RS0 853 aaKnown RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 GAS2L1Q99501 681 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 JPH2Q9BR39 696 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 BHMT2Q9H2M3 363 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PRDM6Q9NQX0 595 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 LRFN2Q9ULH4 789 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PIN4Q9Y237 131 aaKnown RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PPME1Q9Y570 386 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 PCDHB7Q9Y5E2 793 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 MRPL42Q9Y6G3 142 aaKnown RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 TRANK1O15050 2925 aa8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 COL4A4P53420 1690 aaPredicted RBP8.53□□□□□ -1.04
HMGB3P1-201ENST00000393368 TBKBP1A7MCY6 615 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 MEIS3P2A8K0S8 358 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 LINC00271P0C7V0 271 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 ZSCAN20P17040 1043 aaPredicted RBP8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 ATF7P17544 494 aaPredicted RBP8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 SFPQP23246 707 aaKnown RBP eCLIP8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 MARCKSP29966 332 aaPredicted RBP8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 CTNNB1P35222 781 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 ERVK-21P61565 698 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 RAD51AP2Q09MP3 1159 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 PDIA5Q14554 519 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 PTPAQ15257 358 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 EPC2Q52LR7 807 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 SLC24A5Q71RS6 500 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 CABP7Q86V35 215 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 CDR2LQ86X02 465 aaPredicted RBP8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 FBXO22Q8NEZ5 403 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 LPPQ93052 612 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 CPB2Q96IY4 423 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 CLIC6Q96NY7 704 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 USP28Q96RU2 1077 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 KIFC3Q9BVG8 833 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 RUSC1Q9BVN2 902 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 RAB34Q9BZG1 259 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 C1orf112Q9NSG2 853 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 RNF19AQ9NV58 838 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 DBR1Q9UK59 544 aaKnown RBP8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 USP20Q9Y2K6 914 aa8.52□□□□□ -1.05
HMGB3P1-201ENST00000393368 EVPLQ92817 2033 aa8.51□□□□□ -1.05
HMGB3P1-201ENST00000393368 LRRIQ4A6NIV6 560 aa8.51□□□□□ -1.05
HMGB3P1-201ENST00000393368 INO80B-WBP1J3KQ70 363 aa8.51□□□□□ -1.05
HMGB3P1-201ENST00000393368 B4GALT5O43286 388 aa8.51□□□□□ -1.05
HMGB3P1-201ENST00000393368 GAS2O43903 313 aaKnown RBP8.51□□□□□ -1.05
HMGB3P1-201ENST00000393368 TSPAN1O60635 241 aa8.51□□□□□ -1.05
HMGB3P1-201ENST00000393368 EDN1P05305 212 aa8.51□□□□□ -1.05
HMGB3P1-201ENST00000393368 SSBP05455 408 aaKnown RBP eCLIP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms