RNA–Protein interactions for RNA: YPL234C

VMA11, Transcript of Vacuolar ATPase V0 domain subunit c', yeast

Gene VMA11, Length 495 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA11	YPL234C	HSP104	P31539	908 aa	Known RBP	10.52	□□□□□ -0.73
VMA11	YPL234C	AOS1	Q06624	347 aa		10.52	□□□□□ -0.73
VMA11	YPL234C	SRT1	Q03175	343 aa		10.51	□□□□□ -0.73
VMA11	YPL234C	REB1	P21538	810 aa		10.5	□□□□□ -0.73
VMA11	YPL234C	YBR287W	P38355	427 aa		10.5	□□□□□ -0.73
VMA11	YPL234C	CTF4	Q01454	927 aa		10.5	□□□□□ -0.73
VMA11	YPL234C	ECM16	Q04217	1267 aa	Known RBP	10.5	□□□□□ -0.73
VMA11	YPL234C	YRF1-3	P0CX14	1859 aa		10.49	□□□□□ -0.73
VMA11	YPL234C	YRF1-7	P0CX15	1859 aa		10.49	□□□□□ -0.73
VMA11	YPL234C	YRF1-6	P53819	1859 aa		10.49	□□□□□ -0.73
VMA11	YPL234C	PRP5	P21372	849 aa	Predicted RBP	10.49	□□□□□ -0.73
VMA11	YPL234C	YPP1	P46951	817 aa		10.49	□□□□□ -0.73
VMA11	YPL234C	BMS1	Q08965	1183 aa	Known RBP	10.48	□□□□□ -0.73
VMA11	YPL234C	SLM3	Q12093	417 aa		10.48	□□□□□ -0.73
VMA11	YPL234C	PRP45	P28004	379 aa	Predicted RBP	10.47	□□□□□ -0.73
VMA11	YPL234C	NSE3	Q05541	303 aa		10.46	□□□□□ -0.73
VMA11	YPL234C	ENT1	Q12518	454 aa		10.46	□□□□□ -0.73
VMA11	YPL234C	LYS2	P07702	1392 aa		10.46	□□□□□ -0.74
VMA11	YPL234C	UGA3	P26370	528 aa		10.45	□□□□□ -0.74
VMA11	YPL234C	YNG2	P38806	282 aa	Known RBP	10.45	□□□□□ -0.74
VMA11	YPL234C	CSI1	Q04368	295 aa		10.45	□□□□□ -0.74
VMA11	YPL234C	COQ4	O13525	335 aa		10.44	□□□□□ -0.74
VMA11	YPL234C	CLC1	P17891	233 aa		10.44	□□□□□ -0.74
VMA11	YPL234C	KCC4	P25389	1037 aa		10.44	□□□□□ -0.74
VMA11	YPL234C	MSB3	P48566	633 aa	Predicted RBP	10.44	□□□□□ -0.74
VMA11	YPL234C	PCT1	P13259	424 aa		10.43	□□□□□ -0.74
VMA11	YPL234C	SPO1	P53541	631 aa		10.43	□□□□□ -0.74
VMA11	YPL234C	NOP8	Q08287	484 aa	Predicted RBP	10.43	□□□□□ -0.74
VMA11	YPL234C	RIM15	P43565	1770 aa		10.42	□□□□□ -0.74
VMA11	YPL234C	RAD50	P12753	1312 aa		10.42	□□□□□ -0.74
VMA11	YPL234C	PRI1	P10363	409 aa		10.42	□□□□□ -0.74
VMA11	YPL234C	ILV3	P39522	585 aa	Known RBP	10.42	□□□□□ -0.74
VMA11	YPL234C	XKS1	P42826	600 aa		10.42	□□□□□ -0.74
VMA11	YPL234C	ENV9	Q08651	330 aa		10.42	□□□□□ -0.74
VMA11	YPL234C	TCB1	Q12466	1186 aa		10.42	□□□□□ -0.74
VMA11	YPL234C	RPS19A	P07280	144 aa	Known RBP	10.41	□□□□□ -0.74
VMA11	YPL234C	RPS19B	P07281	144 aa	Predicted RBP	10.41	□□□□□ -0.74
VMA11	YPL234C	NMD2	P38798	1089 aa	Known RBP	10.41	□□□□□ -0.74
VMA11	YPL234C	DUR1,2	P32528	1835 aa	Known RBP	10.4	□□□□□ -0.74
VMA11	YPL234C	RCR1	P38212	213 aa		10.4	□□□□□ -0.74
VMA11	YPL234C	YMR074C	Q04773	145 aa		10.4	□□□□□ -0.74
VMA11	YPL234C	NKP2	Q06162	153 aa		10.4	□□□□□ -0.74
VMA11	YPL234C	RSF2	P46974	1380 aa		10.39	□□□□□ -0.75
VMA11	YPL234C	NUP145	P49687	1317 aa		10.39	□□□□□ -0.75
VMA11	YPL234C	SNF7	P39929	240 aa	Known RBP	10.39	□□□□□ -0.75
VMA11	YPL234C	YOL057W	Q08225	711 aa		10.38	□□□□□ -0.75
VMA11	YPL234C	MRP7	P12687	371 aa		10.37	□□□□□ -0.75
VMA11	YPL234C	RAD24	P32641	659 aa		10.37	□□□□□ -0.75
VMA11	YPL234C	VPS24	P36095	224 aa	Known RBP	10.37	□□□□□ -0.75
VMA11	YPL234C	RFC1	P38630	861 aa	Known RBP	10.37	□□□□□ -0.75
VMA11	YPL234C	IMH1	Q06704	911 aa	Known RBP	10.37	□□□□□ -0.75
VMA11	YPL234C	RAD4	P14736	754 aa		10.35	□□□□□ -0.75
VMA11	YPL234C	INP54	Q08227	384 aa	Known RBP	10.35	□□□□□ -0.75
VMA11	YPL234C	RLF2	Q12495	606 aa		10.35	□□□□□ -0.75
VMA11	YPL234C	HGH1	P48362	394 aa	Known RBP	10.34	□□□□□ -0.75
VMA11	YPL234C	ROX1	P25042	368 aa		10.33	□□□□□ -0.76
VMA11	YPL234C	YGR122W	P53272	402 aa		10.33	□□□□□ -0.76
VMA11	YPL234C	LSP1	Q12230	341 aa	Known RBP	10.33	□□□□□ -0.76
VMA11	YPL234C	UTP10	P42945	1769 aa	Known RBP	10.32	□□□□□ -0.76
VMA11	YPL234C	ROM2	P51862	1356 aa	Known RBP	10.32	□□□□□ -0.76
VMA11	YPL234C	GCD7	P32502	381 aa	Predicted RBP	10.32	□□□□□ -0.76
VMA11	YPL234C	BOI2	P39969	1040 aa		10.32	□□□□□ -0.76
VMA11	YPL234C	DJP1	P40564	432 aa		10.32	□□□□□ -0.76
VMA11	YPL234C	MEC3	Q02574	474 aa		10.32	□□□□□ -0.76
VMA11	YPL234C	YDR306C	Q06640	478 aa		10.32	□□□□□ -0.76
VMA11	YPL234C	ALE1	Q08548	619 aa		10.32	□□□□□ -0.76
VMA11	YPL234C	DLD1	P32891	587 aa		10.31	□□□□□ -0.76
VMA11	YPL234C	ITC1	P53125	1264 aa		10.31	□□□□□ -0.76
VMA11	YPL234C	GCR2	Q01722	534 aa		10.31	□□□□□ -0.76
VMA11	YPL234C	BUD31	P25337	157 aa	Predicted RBP	10.3	□□□□□ -0.76
VMA11	YPL234C	BDP1	P46678	594 aa		10.3	□□□□□ -0.76
VMA11	YPL234C	CDC16	P09798	840 aa		10.29	□□□□□ -0.76
VMA11	YPL234C	SRS2	P12954	1174 aa		10.29	□□□□□ -0.76
VMA11	YPL234C	NUP133	P36161	1157 aa		10.29	□□□□□ -0.76
VMA11	YPL234C	DNM1	P54861	757 aa		10.29	□□□□□ -0.76
VMA11	YPL234C	BRN1	P38170	754 aa		10.28	□□□□□ -0.76
VMA11	YPL234C	CST6	P40535	587 aa		10.28	□□□□□ -0.76
VMA11	YPL234C	MSP1	P28737	362 aa		10.27	□□□□□ -0.77
VMA11	YPL234C	SWC3	P31376	625 aa		10.27	□□□□□ -0.77
VMA11	YPL234C	ADE16	P54113	591 aa	Known RBP	10.27	□□□□□ -0.77
VMA11	YPL234C	ZDS2	P54786	942 aa		10.27	□□□□□ -0.77
VMA11	YPL234C	IES2	P40154	320 aa		10.26	□□□□□ -0.77
VMA11	YPL234C	YPR148C	Q06523	435 aa		10.26	□□□□□ -0.77
VMA11	YPL234C	VAS1	P07806	1104 aa	Known RBP	10.25	□□□□□ -0.77
VMA11	YPL234C	OSM1	P21375	501 aa	Known RBP	10.25	□□□□□ -0.77
VMA11	YPL234C	RMT2	Q03305	412 aa		10.25	□□□□□ -0.77
VMA11	YPL234C	ATG13	Q06628	738 aa		10.25	□□□□□ -0.77
VMA11	YPL234C	NCB2	Q92317	146 aa		10.25	□□□□□ -0.77
VMA11	YPL234C	SWI1	P09547	1314 aa		10.25	□□□□□ -0.77
VMA11	YPL234C	YBP2	P53169	641 aa		10.24	□□□□□ -0.77
VMA11	YPL234C	RNR2	P09938	399 aa	Known RBP	10.23	□□□□□ -0.77
VMA11	YPL234C	YKL133C	P36066	463 aa		10.22	□□□□□ -0.77
VMA11	YPL234C	HXT13	P39924	564 aa		10.22	□□□□□ -0.77
VMA11	YPL234C	SLN1	P39928	1220 aa	Predicted RBP	10.22	□□□□□ -0.77
VMA11	YPL234C	FRK1	Q03002	865 aa	Predicted RBP	10.22	□□□□□ -0.77
VMA11	YPL234C	VPS64	Q03944	604 aa		10.22	□□□□□ -0.77
VMA11	YPL234C	ARL1	P38116	183 aa	Known RBP	10.21	□□□□□ -0.77
VMA11	YPL234C	SSF1	P38789	453 aa	Predicted RBP	10.21	□□□□□ -0.77
VMA11	YPL234C	YJR008W	P47085	338 aa		10.21	□□□□□ -0.77
VMA11	YPL234C	PDR18	P53756	1333 aa		10.21	□□□□□ -0.78

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms