RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeastyeast

Gene SHH4, Length 507 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHH4YLR164W YNL050CP53952 270 aa12.72□□□□□ -0.37
SHH4YLR164W COBP00163 385 aa12.71□□□□□ -0.37
SHH4YLR164W AOS1Q06624 347 aa12.71□□□□□ -0.37
SHH4YLR164W OSM1P21375 501 aaKnown RBP12.7□□□□□ -0.38
SHH4YLR164W YKR075CP36155 307 aa12.69□□□□□ -0.38
SHH4YLR164W CTF4Q01454 927 aa12.69□□□□□ -0.38
SHH4YLR164W MEC3Q02574 474 aa12.68□□□□□ -0.38
SHH4YLR164W YMR074CQ04773 145 aa12.67□□□□□ -0.38
SHH4YLR164W RRT14P40470 206 aa12.66□□□□□ -0.38
SHH4YLR164W RPN11P43588 306 aaKnown RBP12.66□□□□□ -0.38
SHH4YLR164W YBR287WP38355 427 aa12.65□□□□□ -0.38
SHH4YLR164W ZDS1P50111 915 aaKnown RBP12.64□□□□□ -0.39
SHH4YLR164W KCC4P25389 1037 aa12.63□□□□□ -0.39
SHH4YLR164W ATG13Q06628 738 aa12.63□□□□□ -0.39
SHH4YLR164W COQ4O13525 335 aa12.62□□□□□ -0.39
SHH4YLR164W GYP7P48365 746 aa12.62□□□□□ -0.39
SHH4YLR164W ALE1Q08548 619 aa12.62□□□□□ -0.39
SHH4YLR164W BMS1Q08965 1183 aaKnown RBP12.62□□□□□ -0.39
SHH4YLR164W NPR2P39923 615 aa12.61□□□□□ -0.39
SHH4YLR164W NAB6Q03735 1134 aaKnown RBP RIP-Chip data12.61□□□□□ -0.39not detected
SHH4YLR164W MAM1P40065 302 aa12.6□□□□□ -0.39
SHH4YLR164W SRT1Q03175 343 aa12.6□□□□□ -0.39
SHH4YLR164W TUM1Q08686 304 aaKnown RBP12.6□□□□□ -0.39
SHH4YLR164W UGA3P26370 528 aa12.58□□□□□ -0.4
SHH4YLR164W YBP2P53169 641 aa12.58□□□□□ -0.4
SHH4YLR164W BUD31P25337 157 aaPredicted RBP12.57□□□□□ -0.4
SHH4YLR164W YIL092WP40497 633 aa12.57□□□□□ -0.4
SHH4YLR164W YRB30P53107 440 aaPredicted RBP12.56□□□□□ -0.4
SHH4YLR164W ZDS2P54786 942 aa12.56□□□□□ -0.4
SHH4YLR164W NSE3Q05541 303 aa12.56□□□□□ -0.4
SHH4YLR164W RIM15P43565 1770 aa12.56□□□□□ -0.4
SHH4YLR164W EDE1P34216 1381 aa12.56□□□□□ -0.4
SHH4YLR164W DAL5P15365 543 aa12.55□□□□□ -0.4
SHH4YLR164W RAD4P14736 754 aa12.54□□□□□ -0.4
SHH4YLR164W LAM6Q08001 693 aa12.54□□□□□ -0.4
SHH4YLR164W LYS4P49367 693 aaPredicted RBP12.53□□□□□ -0.4
SHH4YLR164W LYS2P07702 1392 aa12.53□□□□□ -0.4
SHH4YLR164W RMT2Q03305 412 aa12.52□□□□□ -0.41
SHH4YLR164W PRP40P33203 583 aaKnown RBP12.51□□□□□ -0.41
SHH4YLR164W YGR122WP53272 402 aa12.51□□□□□ -0.41
SHH4YLR164W YOL057WQ08225 711 aa12.51□□□□□ -0.41
SHH4YLR164W GRX1P25373 110 aaKnown RBP12.49□□□□□ -0.41
SHH4YLR164W YJL181WP46987 611 aa12.49□□□□□ -0.41
SHH4YLR164W NOP53Q12080 455 aaKnown RBP12.49□□□□□ -0.41
SHH4YLR164W RAD2P07276 1031 aa12.47□□□□□ -0.41
SHH4YLR164W MAK21Q12176 1025 aaKnown RBP12.47□□□□□ -0.41
SHH4YLR164W APL2P36000 726 aaPredicted RBP12.46□□□□□ -0.41
SHH4YLR164W CTH1P47976 325 aa12.46□□□□□ -0.41
SHH4YLR164W CSI1Q04368 295 aa12.46□□□□□ -0.41
SHH4YLR164W YDR306CQ06640 478 aa12.46□□□□□ -0.41
SHH4YLR164W MSB4Q12317 492 aa12.46□□□□□ -0.41
SHH4YLR164W DCD1P06773 312 aa12.45□□□□□ -0.42
SHH4YLR164W ILV3P39522 585 aaKnown RBP12.45□□□□□ -0.42
SHH4YLR164W GRE2Q12068 342 aaKnown RBP12.45□□□□□ -0.42
SHH4YLR164W TRP5P00931 707 aaKnown RBP12.44□□□□□ -0.42
SHH4YLR164W ARG8P18544 423 aa12.44□□□□□ -0.42
SHH4YLR164W RAD24P32641 659 aa12.44□□□□□ -0.42
SHH4YLR164W UBP1P25037 809 aa12.43□□□□□ -0.42
SHH4YLR164W YPP1P46951 817 aa12.43□□□□□ -0.42
SHH4YLR164W VPS64Q03944 604 aa12.43□□□□□ -0.42
SHH4YLR164W YPR204WQ08995 1032 aa12.43□□□□□ -0.42
SHH4YLR164W SWI1P09547 1314 aa12.42□□□□□ -0.42
SHH4YLR164W MRP7P12687 371 aa12.42□□□□□ -0.42
SHH4YLR164W SWC3P31376 625 aa12.42□□□□□ -0.42
SHH4YLR164W BUD27P43573 796 aaKnown RBP RIP-Chip data12.42□□□□□ -0.42not detected
SHH4YLR164W POL32P47110 350 aa12.42□□□□□ -0.42
SHH4YLR164W TEA1P47988 759 aa12.4□□□□□ -0.42
SHH4YLR164W SSP2Q08646 371 aa12.4□□□□□ -0.42
SHH4YLR164W PHM7Q12252 991 aa12.4□□□□□ -0.42
SHH4YLR164W NYV1Q12255 253 aa12.4□□□□□ -0.42
SHH4YLR164W NUP133P36161 1157 aa12.38□□□□□ -0.43
SHH4YLR164W YGL082WP53155 381 aa12.38□□□□□ -0.43
SHH4YLR164W PUF6Q04373 656 aaKnown RBP12.38□□□□□ -0.43
SHH4YLR164W RPS19AP07280 144 aaKnown RBP12.37□□□□□ -0.43
SHH4YLR164W RPS19BP07281 144 aaPredicted RBP12.37□□□□□ -0.43
SHH4YLR164W CST6P40535 587 aa12.37□□□□□ -0.43
SHH4YLR164W DNM1P54861 757 aa12.37□□□□□ -0.43
SHH4YLR164W YBL086CP38177 466 aa12.36□□□□□ -0.43
SHH4YLR164W YJR008WP47085 338 aa12.36□□□□□ -0.43
SHH4YLR164W SER1P33330 395 aaKnown RBP12.35□□□□□ -0.43
SHH4YLR164W YFR016CP43597 1233 aaKnown RBP12.35□□□□□ -0.43
SHH4YLR164W FCP1Q03254 732 aa12.35□□□□□ -0.43
SHH4YLR164W UTP10P42945 1769 aaKnown RBP12.34□□□□□ -0.43
SHH4YLR164W BOI2P39969 1040 aa12.34□□□□□ -0.43
SHH4YLR164W RPG1P38249 964 aaKnown RBP12.33□□□□□ -0.44
SHH4YLR164W YNG2P38806 282 aaKnown RBP12.33□□□□□ -0.44
SHH4YLR164W SPO1P53541 631 aa12.33□□□□□ -0.44
SHH4YLR164W MDG1P53885 366 aa12.33□□□□□ -0.44
SHH4YLR164W BUG1Q12191 341 aa12.33□□□□□ -0.44
SHH4YLR164W LPD1P09624 499 aaKnown RBP12.32□□□□□ -0.44
SHH4YLR164W PRI1P10363 409 aa12.32□□□□□ -0.44
SHH4YLR164W HXT10P43581 546 aa12.32□□□□□ -0.44
SHH4YLR164W YLR271WQ06152 274 aa12.32□□□□□ -0.44
SHH4YLR164W NOP8Q08287 484 aaPredicted RBP12.32□□□□□ -0.44
SHH4YLR164W BDF1P35817 686 aa12.31□□□□□ -0.44
SHH4YLR164W NOP2P40991 618 aaKnown RBP12.31□□□□□ -0.44
SHH4YLR164W SSA2P10592 639 aaKnown RBP12.3□□□□□ -0.44
SHH4YLR164W RIX7Q07844 837 aaKnown RBP12.3□□□□□ -0.44
SHH4YLR164W TFA1P36100 482 aa12.29□□□□□ -0.44
SHH4YLR164W CTI6Q08923 506 aa12.29□□□□□ -0.44
Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms