RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeastyeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CBF1YJR060W AIM7Q12156 149 aa8.11□□□□□ -1.11
CBF1YJR060W BUD3P25558 1636 aa8.11□□□□□ -1.11
CBF1YJR060W PDR1P12383 1068 aa8.1□□□□□ -1.11
CBF1YJR060W TRM3Q07527 1436 aa8.1□□□□□ -1.11
CBF1YJR060W RTT106P40161 455 aa8.08□□□□□ -1.12
CBF1YJR060W CHC1P22137 1653 aaKnown RBP8.08□□□□□ -1.12
CBF1YJR060W IQG1Q12280 1495 aa8.07□□□□□ -1.12
CBF1YJR060W DNF2Q12675 1612 aa8.07□□□□□ -1.12
CBF1YJR060W PDR10P51533 1564 aa8.06□□□□□ -1.12
CBF1YJR060W KIN1P13185 1064 aa8.06□□□□□ -1.12
CBF1YJR060W MET10P39692 1035 aa8.06□□□□□ -1.12
CBF1YJR060W CAT8P39113 1433 aa8.05□□□□□ -1.12
CBF1YJR060W GEA1P47102 1408 aaPredicted RBP8.05□□□□□ -1.12
CBF1YJR060W MMS1Q06211 1407 aa8.05□□□□□ -1.12
CBF1YJR060W TY3B-GQ99315 1547 aa8.05□□□□□ -1.12
CBF1YJR060W YML082WQ04533 649 aaKnown RBP8.05□□□□□ -1.12
CBF1YJR060W NUD1P32336 851 aa8.04□□□□□ -1.12
CBF1YJR060W NPL4P33755 580 aa8.04□□□□□ -1.12
CBF1YJR060W NUP157P40064 1391 aaKnown RBP8.03□□□□□ -1.12
CBF1YJR060W RAM1P22007 431 aa8.03□□□□□ -1.12
CBF1YJR060W ITT1Q04638 464 aa8.02□□□□□ -1.13
CBF1YJR060W ARO1P08566 1588 aaKnown RBP8.01□□□□□ -1.13
CBF1YJR060W VRP1P37370 817 aa8□□□□□ -1.13
CBF1YJR060W NIS1P53939 407 aa8□□□□□ -1.13
CBF1YJR060W YPR015CQ12531 247 aa8□□□□□ -1.13
CBF1YJR060W BCK2P33306 851 aa7.99□□□□□ -1.13
CBF1YJR060W STR2P47164 639 aa7.99□□□□□ -1.13
CBF1YJR060W ISM1P48526 1002 aa7.99□□□□□ -1.13
CBF1YJR060W YMR196WQ04336 1088 aa7.99□□□□□ -1.13
CBF1YJR060W FPK1P53739 893 aa7.97□□□□□ -1.13
CBF1YJR060W SEC7P11075 2009 aaKnown RBP7.96□□□□□ -1.13
CBF1YJR060W SIT4P20604 311 aa7.95□□□□□ -1.14
CBF1YJR060W GCD11P32481 527 aaKnown RBP7.95□□□□□ -1.14
CBF1YJR060W BUD20Q08004 166 aaPredicted RBP7.95□□□□□ -1.14
CBF1YJR060W KEX2P13134 814 aa7.94□□□□□ -1.14
CBF1YJR060W PRT1P06103 763 aaKnown RBP7.92□□□□□ -1.14
CBF1YJR060W CSN12P47130 423 aa7.92□□□□□ -1.14
CBF1YJR060W YNL115CP53925 644 aa7.92□□□□□ -1.14
CBF1YJR060W GYP1Q08484 637 aa7.92□□□□□ -1.14
CBF1YJR060W GLN1P32288 370 aaKnown RBP7.91□□□□□ -1.14
CBF1YJR060W RTF1P53064 558 aa7.91□□□□□ -1.14
CBF1YJR060W HST2P53686 357 aa7.91□□□□□ -1.14
CBF1YJR060W ERF2Q06551 359 aa7.91□□□□□ -1.14
CBF1YJR060W TYW1Q08960 810 aaKnown RBP7.91□□□□□ -1.14
CBF1YJR060W SCJ1P25303 377 aa7.9□□□□□ -1.14
CBF1YJR060W MMP1Q12372 583 aa7.9□□□□□ -1.14
CBF1YJR060W YOR093CQ12275 1648 aa7.89□□□□□ -1.15
CBF1YJR060W GUA1P38625 525 aaKnown RBP7.89□□□□□ -1.15
CBF1YJR060W RLF2Q12495 606 aa7.89□□□□□ -1.15
CBF1YJR060W TY1A-DR4O74302 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-HP0C2I4 478 aaKnown RBP7.88□□□□□ -1.15
CBF1YJR060W TY1A-AP0CX57 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-PR1P0CX58 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-ORP0CX59 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-PR2P0CX60 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-DR5P0CX65 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-ER2P0CX66 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-GR3P0CX67 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-LR1P0CX68 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-MR2P0CX69 440 aa7.88□□□□□ -1.15
CBF1YJR060W SEC2P17065 759 aa7.88□□□□□ -1.15
CBF1YJR060W SLY41P22215 453 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-JR2P47099 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-DR1Q03856 440 aa7.88□□□□□ -1.15
CBF1YJR060W SAS4Q04003 481 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-ML1Q04706 440 aaKnown RBP7.88□□□□□ -1.15
CBF1YJR060W TY1A-BRQ12217 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-NL2Q12470 440 aa7.88□□□□□ -1.15
CBF1YJR060W TY1A-GR2Q12485 440 aa7.88□□□□□ -1.15
CBF1YJR060W XDJ1P39102 459 aa7.87□□□□□ -1.15
CBF1YJR060W SRB8P25648 1427 aa7.86□□□□□ -1.15
CBF1YJR060W SSA2P10592 639 aaKnown RBP7.86□□□□□ -1.15
CBF1YJR060W ESS1P22696 170 aa7.86□□□□□ -1.15
CBF1YJR060W YSP2Q06681 1438 aa7.86□□□□□ -1.15
CBF1YJR060W KTR1P27810 393 aaKnown RBP7.85□□□□□ -1.15
CBF1YJR060W DNF3Q12674 1656 aa7.85□□□□□ -1.15
CBF1YJR060W PAT1P25644 796 aaKnown RBP7.83□□□□□ -1.16
CBF1YJR060W SPT16P32558 1035 aaKnown RBP7.83□□□□□ -1.16
CBF1YJR060W RRN7P40992 514 aa7.82□□□□□ -1.16
CBF1YJR060W PKH3Q03306 898 aaPredicted RBP7.82□□□□□ -1.16
CBF1YJR060W BNR1P40450 1375 aa7.82□□□□□ -1.16
CBF1YJR060W TUB4P53378 473 aa7.81□□□□□ -1.16
CBF1YJR060W HPC2Q01448 625 aa7.81□□□□□ -1.16
CBF1YJR060W YJU3P28321 313 aa7.8□□□□□ -1.16
CBF1YJR060W MRF1P30775 413 aaPredicted RBP7.79□□□□□ -1.16
CBF1YJR060W HGH1P48362 394 aaKnown RBP7.79□□□□□ -1.16
CBF1YJR060W PUS6P53294 404 aa7.79□□□□□ -1.16
CBF1YJR060W IKI3Q06706 1349 aaKnown RBP7.78□□□□□ -1.16
CBF1YJR060W TBF1Q02457 562 aa7.78□□□□□ -1.16
CBF1YJR060W AGE1Q04412 482 aa7.78□□□□□ -1.16
CBF1YJR060W NUP188P52593 1655 aaKnown RBP7.78□□□□□ -1.16
CBF1YJR060W ARG8P18544 423 aa7.77□□□□□ -1.17
CBF1YJR060W TRM1P15565 570 aaKnown RBP7.76□□□□□ -1.17
CBF1YJR060W BRL1P38770 471 aa7.76□□□□□ -1.17
CBF1YJR060W PAC1P39946 494 aaKnown RBP7.76□□□□□ -1.17
CBF1YJR060W BUB1P41695 1021 aaKnown RBP RIP-Chip data7.76□□□□□ -1.17not detected
CBF1YJR060W TFB3Q03290 321 aa7.76□□□□□ -1.17
CBF1YJR060W LAM6Q08001 693 aa7.76□□□□□ -1.17
CBF1YJR060W GCN2P15442 1659 aa7.76□□□□□ -1.17
CBF1YJR060W ERG12P07277 443 aa7.75□□□□□ -1.17
Retrieved 100 of 5,963 RNA–protein pairs in 9.2 ms