RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	XDJ1	P39102	459 aa		6.69	□□□□□ -1.34
UBC8	YEL012W	MID1	P41821	548 aa		6.69	□□□□□ -1.34
UBC8	YEL012W	TY3B-G	Q99315	1547 aa		6.69	□□□□□ -1.34
UBC8	YEL012W	YBT1	P32386	1661 aa		6.68	□□□□□ -1.34
UBC8	YEL012W	VRP1	P37370	817 aa		6.68	□□□□□ -1.34
UBC8	YEL012W	YAP3	P38749	330 aa		6.68	□□□□□ -1.34
UBC8	YEL012W	MVP1	P40959	511 aa	Known RBP	6.68	□□□□□ -1.34
UBC8	YEL012W	TFB3	Q03290	321 aa		6.67	□□□□□ -1.34
UBC8	YEL012W	KTR1	P27810	393 aa	Known RBP	6.66	□□□□□ -1.34
UBC8	YEL012W	MAK10	Q02197	733 aa		6.66	□□□□□ -1.34
UBC8	YEL012W	CDC73	Q06697	393 aa		6.66	□□□□□ -1.34
UBC8	YEL012W	CSN12	P47130	423 aa		6.65	□□□□□ -1.34
UBC8	YEL012W	TEA1	P47988	759 aa		6.65	□□□□□ -1.34
UBC8	YEL012W	ARH1	P48360	493 aa		6.65	□□□□□ -1.34
UBC8	YEL012W	PEX29	Q03370	554 aa		6.64	□□□□□ -1.35
UBC8	YEL012W	CSC1	Q06538	782 aa		6.64	□□□□□ -1.35
UBC8	YEL012W	BNR1	P40450	1375 aa		6.63	□□□□□ -1.35
UBC8	YEL012W	PKC1	P24583	1151 aa		6.62	□□□□□ -1.35
UBC8	YEL012W	CLB5	P30283	435 aa		6.62	□□□□□ -1.35
UBC8	YEL012W	HGH1	P48362	394 aa	Known RBP	6.62	□□□□□ -1.35
UBC8	YEL012W	SSA2	P10592	639 aa	Known RBP	6.61	□□□□□ -1.35
UBC8	YEL012W	NIS1	P53939	407 aa		6.61	□□□□□ -1.35
UBC8	YEL012W	YPR109W	Q06104	294 aa		6.61	□□□□□ -1.35
UBC8	YEL012W	CAT8	P39113	1433 aa		6.6	□□□□□ -1.35
UBC8	YEL012W	GEA1	P47102	1408 aa	Predicted RBP	6.6	□□□□□ -1.35
UBC8	YEL012W	TYW1	Q08960	810 aa	Known RBP	6.6	□□□□□ -1.35
UBC8	YEL012W	TFB4	Q12004	338 aa		6.6	□□□□□ -1.35
UBC8	YEL012W	DPS1	P04802	557 aa	Known RBP	6.58	□□□□□ -1.36
UBC8	YEL012W	SPT23	P35210	1082 aa		6.58	□□□□□ -1.36
UBC8	YEL012W	FPK1	P53739	893 aa		6.58	□□□□□ -1.36
UBC8	YEL012W	IML1	P47170	1584 aa		6.57	□□□□□ -1.36
UBC8	YEL012W	RPP1B	P10622	106 aa	Known RBP	6.57	□□□□□ -1.36
UBC8	YEL012W	BRL1	P38770	471 aa		6.57	□□□□□ -1.36
UBC8	YEL012W	HST2	P53686	357 aa		6.57	□□□□□ -1.36
UBC8	YEL012W	HAP5	Q02516	242 aa		6.57	□□□□□ -1.36
UBC8	YEL012W	MPC54	Q08550	464 aa		6.57	□□□□□ -1.36
UBC8	YEL012W	SIT4	P20604	311 aa		6.56	□□□□□ -1.36
UBC8	YEL012W	GLN1	P32288	370 aa	Known RBP	6.56	□□□□□ -1.36
UBC8	YEL012W	THI12	P42883	340 aa		6.56	□□□□□ -1.36
UBC8	YEL012W	THI5	P43534	340 aa		6.56	□□□□□ -1.36
UBC8	YEL012W	THI11	P47183	340 aa		6.56	□□□□□ -1.36
UBC8	YEL012W	THI13	Q07748	340 aa		6.56	□□□□□ -1.36
UBC8	YEL012W	DPL1	Q05567	589 aa		6.55	□□□□□ -1.36
UBC8	YEL012W	SCJ1	P25303	377 aa		6.54	□□□□□ -1.36
UBC8	YEL012W	TUM1	Q08686	304 aa	Known RBP	6.54	□□□□□ -1.36
UBC8	YEL012W	NUP188	P52593	1655 aa	Known RBP	6.54	□□□□□ -1.36
UBC8	YEL012W	BIM1	P40013	344 aa		6.52	□□□□□ -1.37
UBC8	YEL012W	ESS1	P22696	170 aa		6.51	□□□□□ -1.37
UBC8	YEL012W	PEX21	P50091	288 aa		6.51	□□□□□ -1.37
UBC8	YEL012W	BNI4	P53858	892 aa		6.51	□□□□□ -1.37
UBC8	YEL012W	NMA111	P53920	997 aa		6.51	□□□□□ -1.37
UBC8	YEL012W	ISU2	Q12056	156 aa		6.51	□□□□□ -1.37
UBC8	YEL012W	YRR1	Q12172	810 aa		6.51	□□□□□ -1.37
UBC8	YEL012W	MMP1	Q12372	583 aa		6.51	□□□□□ -1.37
UBC8	YEL012W	YJU3	P28321	313 aa		6.5	□□□□□ -1.37
UBC8	YEL012W	PTC2	P39966	464 aa	Known RBP	6.5	□□□□□ -1.37
UBC8	YEL012W	ATG32	P40458	529 aa		6.5	□□□□□ -1.37
UBC8	YEL012W	YJL007C	P47080	104 aa		6.5	□□□□□ -1.37
UBC8	YEL012W	YMR196W	Q04336	1088 aa		6.5	□□□□□ -1.37
UBC8	YEL012W	TYS1	P36421	394 aa	Known RBP	6.49	□□□□□ -1.37
UBC8	YEL012W	PKH3	Q03306	898 aa	Predicted RBP	6.49	□□□□□ -1.37
UBC8	YEL012W	RAD59	Q12223	238 aa		6.49	□□□□□ -1.37
UBC8	YEL012W	VMR1	P38735	1592 aa		6.48	□□□□□ -1.37
UBC8	YEL012W	TY1B-NL2	Q99337	1749 aa	Known RBP	6.48	□□□□□ -1.37
UBC8	YEL012W	BIO2	P32451	375 aa		6.48	□□□□□ -1.37
UBC8	YEL012W	YML082W	Q04533	649 aa	Known RBP	6.48	□□□□□ -1.37
UBC8	YEL012W	IPL1	P38991	367 aa		6.47	□□□□□ -1.37
UBC8	YEL012W	URN1	Q06525	465 aa	Known RBP	6.47	□□□□□ -1.37
UBC8	YEL012W	HAP1	P0CE41	1502 aa		6.46	□□□□□ -1.37
UBC8	YEL012W	YBL036C	P38197	257 aa		6.46	□□□□□ -1.38
UBC8	YEL012W	RSC30	P38781	883 aa		6.46	□□□□□ -1.38
UBC8	YEL012W	ERG12	P07277	443 aa		6.44	□□□□□ -1.38
UBC8	YEL012W	PDR1	P12383	1068 aa		6.44	□□□□□ -1.38
UBC8	YEL012W	RTF1	P53064	558 aa		6.44	□□□□□ -1.38
UBC8	YEL012W	ERF2	Q06551	359 aa		6.44	□□□□□ -1.38
UBC8	YEL012W	SRB8	P25648	1427 aa		6.43	□□□□□ -1.38
UBC8	YEL012W	TIF1	P10081	395 aa	Known RBP	6.43	□□□□□ -1.38
UBC8	YEL012W	NUD1	P32336	851 aa		6.43	□□□□□ -1.38
UBC8	YEL012W	CSE4	P36012	229 aa		6.43	□□□□□ -1.38
UBC8	YEL012W	YNL115C	P53925	644 aa		6.43	□□□□□ -1.38
UBC8	YEL012W	PDR5	P33302	1511 aa	Known RBP	6.43	□□□□□ -1.38
UBC8	YEL012W	KEX2	P13134	814 aa		6.42	□□□□□ -1.38
UBC8	YEL012W	SLY41	P22215	453 aa		6.42	□□□□□ -1.38
UBC8	YEL012W	APP1	P53933	587 aa		6.42	□□□□□ -1.38
UBC8	YEL012W	ARG8	P18544	423 aa		6.41	□□□□□ -1.38
UBC8	YEL012W	SUP45	P12385	437 aa	Known RBP	6.4	□□□□□ -1.38
UBC8	YEL012W	STR2	P47164	639 aa		6.4	□□□□□ -1.38
UBC8	YEL012W	ISM1	P48526	1002 aa		6.4	□□□□□ -1.38
UBC8	YEL012W	SRC1	Q03707	834 aa		6.4	□□□□□ -1.38
UBC8	YEL012W	SUB2	Q07478	446 aa	Known RBP	6.4	□□□□□ -1.38
UBC8	YEL012W	LAM6	Q08001	693 aa		6.4	□□□□□ -1.38
UBC8	YEL012W	RAM1	P22007	431 aa		6.39	□□□□□ -1.39
UBC8	YEL012W	YNL108C	P53929	270 aa		6.39	□□□□□ -1.39
UBC8	YEL012W	MAK16	P10962	306 aa	Predicted RBP	6.38	□□□□□ -1.39
UBC8	YEL012W	TRM1	P15565	570 aa	Known RBP	6.38	□□□□□ -1.39
UBC8	YEL012W	TY1A-DR4	O74302	440 aa		6.37	□□□□□ -1.39
UBC8	YEL012W	TY1A-H	P0C2I4	478 aa	Known RBP	6.37	□□□□□ -1.39
UBC8	YEL012W	TY1A-A	P0CX57	440 aa		6.37	□□□□□ -1.39
UBC8	YEL012W	TY1A-PR1	P0CX58	440 aa		6.37	□□□□□ -1.39
UBC8	YEL012W	TY1A-OR	P0CX59	440 aa		6.37	□□□□□ -1.39

Retrieved 100 of 5,963 RNA–protein pairs in 47.7 ms