RNA–Protein interactions for RNA: ENST00000589351.5

DNMT1-220, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 672 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-220ENST00000589351 BHMG1C9JSJ3 638 aaPredicted RBP10.34□□□□□ -0.75
DNMT1-220ENST00000589351 SLC4A5Q9BY07 1137 aa10.34□□□□□ -0.75
DNMT1-220ENST00000589351 BCL2L12Q9HB09 334 aa10.34□□□□□ -0.75
DNMT1-220ENST00000589351 IFFO2Q5TF58 517 aa10.33□□□□□ -0.76
DNMT1-220ENST00000589351 THSD4Q6ZMP0 1018 aa10.33□□□□□ -0.76
DNMT1-220ENST00000589351 HS6ST3Q8IZP7 471 aa10.33□□□□□ -0.76
DNMT1-220ENST00000589351 TOP2AP11388 1531 aaKnown RBP10.33□□□□□ -0.76
DNMT1-220ENST00000589351 RGS20O76081 388 aa10.32□□□□□ -0.76
DNMT1-220ENST00000589351 URB2Q14146 1524 aaKnown RBP10.3□□□□□ -0.76
DNMT1-220ENST00000589351 FOSBP53539 338 aa10.3□□□□□ -0.76
DNMT1-220ENST00000589351 ZBED2Q9BTP6 218 aa10.3□□□□□ -0.76
DNMT1-220ENST00000589351 WNT2BQ93097 391 aa10.29□□□□□ -0.76
DNMT1-220ENST00000589351 IRX2Q9BZI1 471 aaPredicted RBP10.29□□□□□ -0.76
DNMT1-220ENST00000589351 A0A0G2JS52 829 aa10.28□□□□□ -0.76
DNMT1-220ENST00000589351 PTPREP23469 700 aa10.28□□□□□ -0.76
DNMT1-220ENST00000589351 CRISPLD2Q9H0B8 497 aa10.28□□□□□ -0.76
DNMT1-220ENST00000589351 GOLGA8CPA6NN73 597 aa10.27□□□□□ -0.77
DNMT1-220ENST00000589351 PPP1R15BQ5SWA1 713 aa10.26□□□□□ -0.77
DNMT1-220ENST00000589351 MRPL50Q8N5N7 158 aaKnown RBP10.26□□□□□ -0.77
DNMT1-220ENST00000589351 ABCC8Q09428 1581 aa10.26□□□□□ -0.77
DNMT1-220ENST00000589351 IFT140Q96RY7 1462 aa10.25□□□□□ -0.77
DNMT1-220ENST00000589351 ANO8Q9HCE9 1232 aaPredicted RBP10.25□□□□□ -0.77
DNMT1-220ENST00000589351 PRDM2Q13029 1718 aa10.24□□□□□ -0.77
DNMT1-220ENST00000589351 CHGAP10645 457 aaKnown RBP10.24□□□□□ -0.77
DNMT1-220ENST00000589351 NKX1-1Q15270 411 aaPredicted RBP10.24□□□□□ -0.77
DNMT1-220ENST00000589351 ADAM33Q9BZ11 813 aa10.24□□□□□ -0.77
DNMT1-220ENST00000589351 CCDC88BA6NC98 1476 aa10.23□□□□□ -0.77
DNMT1-220ENST00000589351 ZDHHC16Q969W1 377 aa10.22□□□□□ -0.77
DNMT1-220ENST00000589351 JPH4Q96JJ6 628 aa10.22□□□□□ -0.77
DNMT1-220ENST00000589351 EVI5O60447 810 aa10.21□□□□□ -0.77
DNMT1-220ENST00000589351 NBPF3Q9H094 633 aa10.2□□□□□ -0.78
DNMT1-220ENST00000589351 NCKAP5LQ9HCH0 1330 aa10.2□□□□□ -0.78
DNMT1-220ENST00000589351 RIMBP3CA6NJZ7 1639 aa10.19□□□□□ -0.78
DNMT1-220ENST00000589351 RIMBP3BA6NNM3 1639 aa10.19□□□□□ -0.78
DNMT1-220ENST00000589351 RIMBP3Q9UFD9 1639 aa10.19□□□□□ -0.78
DNMT1-220ENST00000589351 TOPBP1Q92547 1522 aa10.19□□□□□ -0.78
DNMT1-220ENST00000589351 ZNF608Q9ULD9 1512 aaPredicted RBP10.18□□□□□ -0.78
DNMT1-220ENST00000589351 CYB5RLQ6IPT4 315 aa10.18□□□□□ -0.78
DNMT1-220ENST00000589351 PDE4AP27815 886 aa10.16□□□□□ -0.78
DNMT1-220ENST00000589351 DNMBPQ6XZF7 1577 aa10.15□□□□□ -0.78
DNMT1-220ENST00000589351 ARHGEF11O15085 1522 aa10.15□□□□□ -0.78
DNMT1-220ENST00000589351 PROX2Q3B8N5 592 aa10.14□□□□□ -0.79
DNMT1-220ENST00000589351 ITGBL1O95965 494 aaPredicted RBP10.13□□□□□ -0.79
DNMT1-220ENST00000589351 RYDENQ9NUL5 291 aaKnown RBP10.13□□□□□ -0.79
DNMT1-220ENST00000589351 EIF4G3O43432 1585 aaKnown RBP10.13□□□□□ -0.79
DNMT1-220ENST00000589351 AQRO60306 1485 aaKnown RBP eCLIP10.12□□□□□ -0.79
DNMT1-220ENST00000589351 PPP1R3GB7ZBB8 358 aa10.12□□□□□ -0.79
DNMT1-220ENST00000589351 ANKK1Q8NFD2 765 aa10.12□□□□□ -0.79
DNMT1-220ENST00000589351 RABGEF1Q9UJ41 708 aa10.12□□□□□ -0.79
DNMT1-220ENST00000589351 COL9A1P20849 921 aa10.11□□□□□ -0.79
DNMT1-220ENST00000589351 BCAMP50895 628 aa10.11□□□□□ -0.79
DNMT1-220ENST00000589351 MAP3K9P80192 1104 aa10.11□□□□□ -0.79
DNMT1-220ENST00000589351 LARP6Q9BRS8 491 aaKnown RBP10.11□□□□□ -0.79
DNMT1-220ENST00000589351 PCDHGA10Q9Y5H3 936 aa10.11□□□□□ -0.79
DNMT1-220ENST00000589351 SOGA1O94964 1423 aa10.08□□□□□ -0.8
DNMT1-220ENST00000589351 TARBP1Q13395 1621 aaKnown RBP10.08□□□□□ -0.8
DNMT1-220ENST00000589351 CHMP7Q8WUX9 453 aaPredicted RBP10.08□□□□□ -0.8
DNMT1-220ENST00000589351 DDX27Q96GQ7 796 aaKnown RBP10.08□□□□□ -0.8
DNMT1-220ENST00000589351 EMILIN3Q9NT22 766 aa10.08□□□□□ -0.8
DNMT1-220ENST00000589351 CHD1O14646 1710 aa10.07□□□□□ -0.8
DNMT1-220ENST00000589351 POLA1P09884 1462 aaPredicted RBP10.07□□□□□ -0.8
DNMT1-220ENST00000589351 SOWAHBA6NEL2 793 aa10.07□□□□□ -0.8
DNMT1-220ENST00000589351 Q6ZNB5 142 aa10.06□□□□□ -0.8
DNMT1-220ENST00000589351 TDRD9Q8NDG6 1382 aaKnown RBP10.05□□□□□ -0.8
DNMT1-220ENST00000589351 LAPTM4BQ86VI4 370 aa10.05□□□□□ -0.8
DNMT1-220ENST00000589351 KIAA1468Q9P260 1216 aa10.05□□□□□ -0.8
DNMT1-220ENST00000589351 GTPBP6O43824 516 aaPredicted RBP10.04□□□□□ -0.8
DNMT1-220ENST00000589351 MFSD10Q14728 455 aa10.04□□□□□ -0.8
DNMT1-220ENST00000589351 ZFRQ96KR1 1074 aaKnown RBP10.04□□□□□ -0.8
DNMT1-220ENST00000589351 WBP1LQ9NX94 342 aa10.04□□□□□ -0.8
DNMT1-220ENST00000589351 RAD54L2Q9Y4B4 1467 aa10.04□□□□□ -0.8
DNMT1-220ENST00000589351 TYW1BQ6NUM6 668 aa10.03□□□□□ -0.8
DNMT1-220ENST00000589351 WDR97A6NE52 1622 aa10.03□□□□□ -0.8
DNMT1-220ENST00000589351 ARAP1Q96P48 1450 aa10.03□□□□□ -0.8
DNMT1-220ENST00000589351 FBXW7Q969H0 707 aa10.02□□□□□ -0.81
DNMT1-220ENST00000589351 PHF14O94880 888 aa10.01□□□□□ -0.81
DNMT1-220ENST00000589351 KCNC4Q03721 635 aa10.01□□□□□ -0.81
DNMT1-220ENST00000589351 SEPT9Q9UHD8 586 aaPredicted RBP10.01□□□□□ -0.81
DNMT1-220ENST00000589351 SNAPC4Q5SXM2 1469 aa10□□□□□ -0.81
DNMT1-220ENST00000589351 FGD5Q6ZNL6 1462 aa10□□□□□ -0.81
DNMT1-220ENST00000589351 MAGI1Q96QZ7 1491 aaPredicted RBP10□□□□□ -0.81
DNMT1-220ENST00000589351 NYAP1Q6ZVC0 841 aa10□□□□□ -0.81
DNMT1-220ENST00000589351 SYNJ1O43426 1573 aa10□□□□□ -0.81
DNMT1-220ENST00000589351 GRIN2BQ13224 1484 aa9.99□□□□□ -0.81
DNMT1-220ENST00000589351 ONECUT3O60422 494 aaPredicted RBP9.98□□□□□ -0.81
DNMT1-220ENST00000589351 C6orf132Q5T0Z8 1188 aa9.97□□□□□ -0.81
DNMT1-220ENST00000589351 SYNJ2O15056 1496 aa9.97□□□□□ -0.81
DNMT1-220ENST00000589351 LCE2BO14633 110 aa9.95□□□□□ -0.82
DNMT1-220ENST00000589351 CUX1P39880 1505 aa9.95□□□□□ -0.82
DNMT1-220ENST00000589351 CLASP1Q7Z460 1538 aa9.95□□□□□ -0.82
DNMT1-220ENST00000589351 GAPVD1Q14C86 1478 aa9.94□□□□□ -0.82
DNMT1-220ENST00000589351 TRIM6-TRIM34B2RNG4 842 aa9.94□□□□□ -0.82
DNMT1-220ENST00000589351 FAM98CQ17RN3 349 aaKnown RBP9.93□□□□□ -0.82
DNMT1-220ENST00000589351 CADPS2Q86UW7 1296 aa9.93□□□□□ -0.82
DNMT1-220ENST00000589351 EPAS1Q99814 870 aa9.93□□□□□ -0.82
DNMT1-220ENST00000589351 TSR3Q9UJK0 312 aaKnown RBP9.93□□□□□ -0.82
DNMT1-220ENST00000589351 HPS5Q9UPZ3 1129 aa9.93□□□□□ -0.82
DNMT1-220ENST00000589351 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.92□□□□□ -0.82
DNMT1-220ENST00000589351 RBM33Q96EV2 1170 aaKnown RBP9.91□□□□□ -0.82
DNMT1-220ENST00000589351 LRCH3Q96II8 777 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms