RNA–Protein interactions for RNA: ENST00000540236.3

PBX1-212, Transcript of PBX homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene PBX1, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-212ENST00000540236 RGL3Q3MIN7 710 aa13.87□□□□□ -0.19
PBX1-212ENST00000540236 NPHP1O15259 732 aa13.87□□□□□ -0.19
PBX1-212ENST00000540236 CCDC173Q0VFZ6 552 aa13.87□□□□□ -0.19
PBX1-212ENST00000540236 PABPN1Q86U42 306 aaKnown RBP eCLIP13.87□□□□□ -0.19
PBX1-212ENST00000540236 APBB1O00213 710 aa13.87□□□□□ -0.19
PBX1-212ENST00000540236 CNTLNQ9NXG0 1405 aa13.86□□□□□ -0.19
PBX1-212ENST00000540236 TAOK2Q9UL54 1235 aa13.86□□□□□ -0.19
PBX1-212ENST00000540236 TNNT1P13805 278 aa13.85□□□□□ -0.19
PBX1-212ENST00000540236 TSC1Q92574 1164 aa13.85□□□□□ -0.19
PBX1-212ENST00000540236 ZBTB22O15209 634 aa13.84□□□□□ -0.19
PBX1-212ENST00000540236 CSPP1Q1MSJ5 1256 aa13.83□□□□□ -0.19
PBX1-212ENST00000540236 ABCC9O60706 1549 aa13.82□□□□□ -0.2
PBX1-212ENST00000540236 PANK1Q8TE04 598 aa13.82□□□□□ -0.2
PBX1-212ENST00000540236 PATL2C9JE40 543 aaKnown RBP13.82□□□□□ -0.2
PBX1-212ENST00000540236 GPATCH11Q8N954 259 aa13.82□□□□□ -0.2
PBX1-212ENST00000540236 ZSCAN30Q86W11 494 aa13.81□□□□□ -0.2
PBX1-212ENST00000540236 KIF7Q2M1P5 1343 aa13.81□□□□□ -0.2
PBX1-212ENST00000540236 CECR2Q9BXF3 1484 aa13.81□□□□□ -0.2
PBX1-212ENST00000540236 ZNF830Q96NB3 372 aaPredicted RBP13.81□□□□□ -0.2
PBX1-212ENST00000540236 C22orf23Q9BZE7 217 aa13.8□□□□□ -0.2
PBX1-212ENST00000540236 SKIDA1Q1XH10 827 aa13.79□□□□□ -0.2
PBX1-212ENST00000540236 IRX3P78415 501 aaPredicted RBP13.79□□□□□ -0.2
PBX1-212ENST00000540236 DHX37Q8IY37 1157 aaKnown RBP13.79□□□□□ -0.2
PBX1-212ENST00000540236 RAPGEF2Q9Y4G8 1499 aa13.79□□□□□ -0.2
PBX1-212ENST00000540236 CCDC7Q96M83 1385 aa13.79□□□□□ -0.2
PBX1-212ENST00000540236 ITPRIPQ8IWB1 547 aa13.78□□□□□ -0.2
PBX1-212ENST00000540236 RRP7AQ9Y3A4 280 aaKnown RBP13.78□□□□□ -0.2
PBX1-212ENST00000540236 SPC24Q8NBT2 197 aa13.78□□□□□ -0.2
PBX1-212ENST00000540236 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.78□□□□□ -0.2
PBX1-212ENST00000540236 SKOR2Q2VWA4 1001 aaPredicted RBP13.78□□□□□ -0.2
PBX1-212ENST00000540236 CCDC39Q9UFE4 941 aa13.77□□□□□ -0.2
PBX1-212ENST00000540236 SEC24BO95487 1268 aa13.77□□□□□ -0.2
PBX1-212ENST00000540236 MTERF4Q7Z6M4 381 aaKnown RBP13.77□□□□□ -0.2
PBX1-212ENST00000540236 SMAP1Q8IYB5 467 aaPredicted RBP13.77□□□□□ -0.2
PBX1-212ENST00000540236 JARID2Q92833 1246 aaPredicted RBP13.77□□□□□ -0.21
PBX1-212ENST00000540236 MTUS2Q5JR59 1369 aa13.77□□□□□ -0.21
PBX1-212ENST00000540236 TBC1D2Q9BYX2 928 aa13.77□□□□□ -0.21
PBX1-212ENST00000540236 PDCL2Q8N4E4 241 aa13.76□□□□□ -0.21
PBX1-212ENST00000540236 PRPF40AO75400 957 aaKnown RBP13.76□□□□□ -0.21
PBX1-212ENST00000540236 U2SURPO15042 1029 aaKnown RBP13.76□□□□□ -0.21
PBX1-212ENST00000540236 C8orf34Q49A92 452 aa13.76□□□□□ -0.21
PBX1-212ENST00000540236 CHMP3Q9Y3E7 222 aa13.75□□□□□ -0.21
PBX1-212ENST00000540236 WIZO95785 1651 aa13.75□□□□□ -0.21
PBX1-212ENST00000540236 BCAR3O75815 825 aa13.75□□□□□ -0.21
PBX1-212ENST00000540236 SASS6Q6UVJ0 657 aa13.75□□□□□ -0.21
PBX1-212ENST00000540236 TMX1Q9H3N1 280 aa13.75□□□□□ -0.21
PBX1-212ENST00000540236 RBM27Q9P2N5 1060 aaKnown RBP13.74□□□□□ -0.21
PBX1-212ENST00000540236 CCDC94Q9BW85 323 aaPredicted RBP13.74□□□□□ -0.21
PBX1-212ENST00000540236 TRIM6-TRIM34B2RNG4 842 aa13.73□□□□□ -0.21
PBX1-212ENST00000540236 TRIM34Q9BYJ4 488 aa13.73□□□□□ -0.21
PBX1-212ENST00000540236 KNSTRNQ9Y448 316 aa13.73□□□□□ -0.21
PBX1-212ENST00000540236 GOLGA2Q08379 1002 aa13.73□□□□□ -0.21
PBX1-212ENST00000540236 IPO4Q8TEX9 1081 aaKnown RBP13.73□□□□□ -0.21
PBX1-212ENST00000540236 ERBB4Q15303 1308 aa13.73□□□□□ -0.21
PBX1-212ENST00000540236 MYBBP1AQ9BQG0 1328 aaKnown RBP13.73□□□□□ -0.21
PBX1-212ENST00000540236 RWDD1Q9H446 243 aaPredicted RBP13.72□□□□□ -0.21
PBX1-212ENST00000540236 CHMP4CQ96CF2 233 aa13.71□□□□□ -0.21
PBX1-212ENST00000540236 MPHOSPH9Q99550 1183 aa13.71□□□□□ -0.22
PBX1-212ENST00000540236 PMFBP1Q8TBY8 1022 aa13.7□□□□□ -0.22
PBX1-212ENST00000540236 CCDC66A2RUB6 948 aa13.7□□□□□ -0.22
PBX1-212ENST00000540236 KLHL34Q8N239 644 aa13.7□□□□□ -0.22
PBX1-212ENST00000540236 IFT57Q9NWB7 429 aa13.7□□□□□ -0.22
PBX1-212ENST00000540236 TNPO1Q92973 898 aaKnown RBP13.69□□□□□ -0.22
PBX1-212ENST00000540236 SYCE3A1L190 88 aa13.69□□□□□ -0.22
PBX1-212ENST00000540236 C17orf53Q8N3J3 647 aaPredicted RBP13.69□□□□□ -0.22
PBX1-212ENST00000540236 GORABQ5T7V8 394 aa13.68□□□□□ -0.22
PBX1-212ENST00000540236 FBXW7Q969H0 707 aa13.68□□□□□ -0.22
PBX1-212ENST00000540236 PDZRN3Q9UPQ7 1066 aa13.68□□□□□ -0.22
PBX1-212ENST00000540236 RALBP1Q15311 655 aa13.68□□□□□ -0.22
PBX1-212ENST00000540236 STAC3Q96MF2 364 aa13.68□□□□□ -0.22
PBX1-212ENST00000540236 IBSPP21815 317 aaPredicted RBP13.67□□□□□ -0.22
PBX1-212ENST00000540236 SSFA2P28290 1259 aa13.67□□□□□ -0.22
PBX1-212ENST00000540236 KIF3AQ9Y496 699 aa13.67□□□□□ -0.22
PBX1-212ENST00000540236 GTF2E1P29083 439 aaPredicted RBP13.67□□□□□ -0.22
PBX1-212ENST00000540236 U2AF2P26368 475 aaKnown RBP eCLIP13.67□□□□□ -0.22
PBX1-212ENST00000540236 TOMM22Q9NS69 142 aa13.67□□□□□ -0.22
PBX1-212ENST00000540236 KIF21BO75037 1637 aa13.67□□□□□ -0.22
PBX1-212ENST00000540236 OFD1O75665 1012 aa13.67□□□□□ -0.22
PBX1-212ENST00000540236 CENPJQ9HC77 1338 aaPredicted RBP13.66□□□□□ -0.22
PBX1-212ENST00000540236 MROH2BQ7Z745 1585 aa13.66□□□□□ -0.22
PBX1-212ENST00000540236 DYNC1I1O14576 645 aa13.66□□□□□ -0.22
PBX1-212ENST00000540236 MAPK8IP3Q9UPT6 1336 aa13.66□□□□□ -0.22
PBX1-212ENST00000540236 PDE3BQ13370 1112 aa13.66□□□□□ -0.22
PBX1-212ENST00000540236 LETM1O95202 739 aaPredicted RBP13.65□□□□□ -0.22
PBX1-212ENST00000540236 IGHDP01880 384 aa13.65□□□□□ -0.22
PBX1-212ENST00000540236 DMTNQ08495 405 aa13.65□□□□□ -0.22
PBX1-212ENST00000540236 CASC1Q6TDU7 716 aa13.65□□□□□ -0.22
PBX1-212ENST00000540236 PNISRQ8TF01 805 aaKnown RBP13.65□□□□□ -0.22
PBX1-212ENST00000540236 KIF15Q9NS87 1388 aa13.65□□□□□ -0.23
PBX1-212ENST00000540236 CCAR2Q8N163 923 aaKnown RBP13.64□□□□□ -0.23
PBX1-212ENST00000540236 SRPK2P78362 688 aaKnown RBP13.64□□□□□ -0.23
PBX1-212ENST00000540236 ST20-MTHFSA0A0A6YYL1 179 aa13.63□□□□□ -0.23
PBX1-212ENST00000540236 GOLGA6L6A8MZA4 724 aa13.63□□□□□ -0.23
PBX1-212ENST00000540236 GTF2F1P35269 517 aaKnown RBP eCLIP13.63□□□□□ -0.23
PBX1-212ENST00000540236 WWC1Q8IX03 1113 aa13.63□□□□□ -0.23
PBX1-212ENST00000540236 ARHGAP35Q9NRY4 1499 aa13.62□□□□□ -0.23
PBX1-212ENST00000540236 PRDM4Q9UKN5 801 aa13.62□□□□□ -0.23
PBX1-212ENST00000540236 TPD52L1Q16890 204 aaPredicted RBP13.62□□□□□ -0.23
PBX1-212ENST00000540236 ANKRD45Q5TZF3 282 aa13.62□□□□□ -0.23
PBX1-212ENST00000540236 MAPKBP1O60336 1514 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms