RNA–Protein interactions for RNA: ENST00000540236.3

PBX1-212, Transcript of PBX homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene PBX1, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-212ENST00000540236 PELP1Q8IZL8 1130 aaKnown RBP18.56■□□□□ 0.56
PBX1-212ENST00000540236 PPARGC1BQ86YN6 1023 aaKnown RBP18.42■□□□□ 0.54
PBX1-212ENST00000540236 PCGF6Q9BYE7 350 aa18.38■□□□□ 0.53
PBX1-212ENST00000540236 HRCP23327 699 aa18.12■□□□□ 0.49
PBX1-212ENST00000540236 MYT1Q01538 1121 aa18.08■□□□□ 0.48
PBX1-212ENST00000540236 SUPT5HO00267 1087 aaKnown RBP18.04■□□□□ 0.48
PBX1-212ENST00000540236 EHMT2Q96KQ7 1210 aa17.79■□□□□ 0.44
PBX1-212ENST00000540236 SHROOM4Q9ULL8 1493 aa17.75■□□□□ 0.43
PBX1-212ENST00000540236 YTHDC1Q96MU7 727 aaKnown RBP17.69■□□□□ 0.42
PBX1-212ENST00000540236 SCAF1Q9H7N4 1312 aaKnown RBP17.62■□□□□ 0.41
PBX1-212ENST00000540236 CENPBP07199 599 aaPredicted RBP17.46■□□□□ 0.39
PBX1-212ENST00000540236 GTF3C3Q9Y5Q9 886 aa17.45■□□□□ 0.38
PBX1-212ENST00000540236 TTBK1Q5TCY1 1321 aaPredicted RBP17.34■□□□□ 0.37
PBX1-212ENST00000540236 DCAF8L2P0C7V8 631 aa17.2■□□□□ 0.34
PBX1-212ENST00000540236 ZEB1P37275 1124 aaPredicted RBP17.13■□□□□ 0.33
PBX1-212ENST00000540236 ACIN1Q9UKV3 1341 aaKnown RBP17.11■□□□□ 0.33
PBX1-212ENST00000540236 NISCHQ9Y2I1 1504 aa17.1■□□□□ 0.33
PBX1-212ENST00000540236 ERICH6Q7L0X2 663 aa17.1■□□□□ 0.33
PBX1-212ENST00000540236 NEUROD1Q13562 356 aa17.09■□□□□ 0.33
PBX1-212ENST00000540236 CCER1Q8TC90 406 aaPredicted RBP17.08■□□□□ 0.32
PBX1-212ENST00000540236 LOC105371045A0A1W2PR82 267 aa17.07■□□□□ 0.32
PBX1-212ENST00000540236 FAM9AQ8IZU1 332 aaPredicted RBP17.04■□□□□ 0.32
PBX1-212ENST00000540236 TRIM26Q12899 539 aaPredicted RBP17.02■□□□□ 0.31
PBX1-212ENST00000540236 BCL11AQ9H165 835 aa17.02■□□□□ 0.31
PBX1-212ENST00000540236 DIEXFQ68CQ4 756 aaKnown RBP16.88■□□□□ 0.29
PBX1-212ENST00000540236 BCANQ96GW7 911 aa16.83■□□□□ 0.29
PBX1-212ENST00000540236 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.83■□□□□ 0.28
PBX1-212ENST00000540236 CHIC1Q5VXU3 224 aa16.67■□□□□ 0.26
PBX1-212ENST00000540236 MYO15BQ96JP2 1530 aa16.55■□□□□ 0.24
PBX1-212ENST00000540236 ANP32EQ9BTT0 268 aa16.54■□□□□ 0.24
PBX1-212ENST00000540236 PRKCSHP14314 528 aaPredicted RBP16.52■□□□□ 0.23
PBX1-212ENST00000540236 CSRNP3Q8WYN3 585 aa16.46■□□□□ 0.23
PBX1-212ENST00000540236 NEFLP07196 543 aa16.42■□□□□ 0.22
PBX1-212ENST00000540236 EIF5BO60841 1220 aaKnown RBP16.33■□□□□ 0.21
PBX1-212ENST00000540236 RTN4Q9NQC3 1192 aaKnown RBP16.29■□□□□ 0.2
PBX1-212ENST00000540236 RANGAP1P46060 587 aaPredicted RBP16.26■□□□□ 0.19
PBX1-212ENST00000540236 NBR1Q14596 966 aa16.26■□□□□ 0.19
PBX1-212ENST00000540236 TRIM41Q8WV44 630 aa16.25■□□□□ 0.19
PBX1-212ENST00000540236 CCDC136Q96JN2 1154 aa16.24■□□□□ 0.19
PBX1-212ENST00000540236 ITGAEP38570 1179 aa16.23■□□□□ 0.19
PBX1-212ENST00000540236 MIER1Q8N108 512 aa16.21■□□□□ 0.19
PBX1-212ENST00000540236 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.19■□□□□ 0.18
PBX1-212ENST00000540236 ZNF316A6NFI3 1004 aaPredicted RBP16.18■□□□□ 0.18
PBX1-212ENST00000540236 FKBP8Q14318 412 aa16.15■□□□□ 0.18
PBX1-212ENST00000540236 HNRNPUL2Q1KMD3 747 aaKnown RBP16.15■□□□□ 0.18
PBX1-212ENST00000540236 RTL5Q5HYW3 569 aaPredicted RBP16.12■□□□□ 0.17
PBX1-212ENST00000540236 SUPT16HQ9Y5B9 1047 aaKnown RBP16.06■□□□□ 0.16
PBX1-212ENST00000540236 DCAF1Q9Y4B6 1507 aa16.04■□□□□ 0.16
PBX1-212ENST00000540236 ANO8Q9HCE9 1232 aaPredicted RBP16.03■□□□□ 0.16
PBX1-212ENST00000540236 TSHZ2Q9NRE2 1034 aa16.02■□□□□ 0.16
PBX1-212ENST00000540236 CNGB1Q14028 1251 aaPredicted RBP15.95■□□□□ 0.14
PBX1-212ENST00000540236 IRX6P78412 446 aaPredicted RBP15.94■□□□□ 0.14
PBX1-212ENST00000540236 CCDC180Q9P1Z9 1646 aa15.94■□□□□ 0.14
PBX1-212ENST00000540236 CDK11AQ9UQ88 783 aaPredicted RBP15.94■□□□□ 0.14
PBX1-212ENST00000540236 DEKP35659 375 aaKnown RBP15.93■□□□□ 0.14
PBX1-212ENST00000540236 APLP2Q06481 763 aa15.92■□□□□ 0.14
PBX1-212ENST00000540236 NPM2Q86SE8 214 aaKnown RBP15.84■□□□□ 0.13
PBX1-212ENST00000540236 RBM19Q9Y4C8 960 aaKnown RBP15.81■□□□□ 0.12
PBX1-212ENST00000540236 UBTFP17480 764 aaKnown RBP15.79■□□□□ 0.12
PBX1-212ENST00000540236 SALL2Q9Y467 1007 aaPredicted RBP15.77■□□□□ 0.12
PBX1-212ENST00000540236 TRIM52Q96A61 297 aa15.75■□□□□ 0.11
PBX1-212ENST00000540236 DAXXQ9UER7 740 aaPredicted RBP15.69■□□□□ 0.1
PBX1-212ENST00000540236 ARXQ96QS3 562 aa15.66■□□□□ 0.1
PBX1-212ENST00000540236 ANP32AP39687 249 aaKnown RBP15.57■□□□□ 0.08
PBX1-212ENST00000540236 LAS1LQ9Y4W2 734 aaKnown RBP15.55■□□□□ 0.08
PBX1-212ENST00000540236 TIMELESSQ9UNS1 1208 aa15.55■□□□□ 0.08
PBX1-212ENST00000540236 POLR3GLQ9BT43 218 aa15.53■□□□□ 0.08
PBX1-212ENST00000540236 CLSPNQ9HAW4 1339 aa15.53■□□□□ 0.08
PBX1-212ENST00000540236 GLIPR1L2Q4G1C9 344 aa15.53■□□□□ 0.08
PBX1-212ENST00000540236 HIRIP3Q9BW71 556 aaPredicted RBP15.52■□□□□ 0.07
PBX1-212ENST00000540236 DDX10Q13206 875 aaKnown RBP15.5■□□□□ 0.07
PBX1-212ENST00000540236 ZBTB47Q9UFB7 747 aaPredicted RBP15.49■□□□□ 0.07
PBX1-212ENST00000540236 SENP3-EIF4A1A0A087X0R7 540 aa15.49■□□□□ 0.07
PBX1-212ENST00000540236 MYT1LQ9UL68 1186 aa15.49■□□□□ 0.07
PBX1-212ENST00000540236 ARID4BQ4LE39 1312 aaPredicted RBP15.48■□□□□ 0.07
PBX1-212ENST00000540236 IL27Q8NEV9 243 aa15.48■□□□□ 0.07
PBX1-212ENST00000540236 KCNH8Q96L42 1107 aa15.48■□□□□ 0.07
PBX1-212ENST00000540236 NOP58Q9Y2X3 529 aaKnown RBP15.46■□□□□ 0.06
PBX1-212ENST00000540236 ANP32CO43423 234 aa15.44■□□□□ 0.06
PBX1-212ENST00000540236 ATP1B4Q9UN42 357 aaPredicted RBP15.43■□□□□ 0.06
PBX1-212ENST00000540236 PKNOX2Q96KN3 472 aa15.41■□□□□ 0.06
PBX1-212ENST00000540236 HNRNPUQ00839 825 aaKnown RBP eCLIP15.4■□□□□ 0.06
PBX1-212ENST00000540236 NEFMP07197 916 aa15.37■□□□□ 0.05
PBX1-212ENST00000540236 MSH5O43196 834 aa15.37■□□□□ 0.05
PBX1-212ENST00000540236 A0A0U1RQG5 324 aaPredicted RBP15.36■□□□□ 0.05
PBX1-212ENST00000540236 AMER1Q5JTC6 1135 aaPredicted RBP15.35■□□□□ 0.05
PBX1-212ENST00000540236 VSIG10Q8N0Z9 540 aa15.34■□□□□ 0.05
PBX1-212ENST00000540236 B4GALNT3Q6L9W6 998 aa15.33■□□□□ 0.04
PBX1-212ENST00000540236 NAP1L5Q96NT1 182 aaPredicted RBP15.31■□□□□ 0.04
PBX1-212ENST00000540236 PODXL2Q9NZ53 605 aa15.3■□□□□ 0.04
PBX1-212ENST00000540236 FAM9BQ8IZU0 186 aa15.26■□□□□ 0.03
PBX1-212ENST00000540236 PLEKHG5O94827 1062 aa15.25■□□□□ 0.03
PBX1-212ENST00000540236 ARID3AQ99856 593 aa15.23■□□□□ 0.03
PBX1-212ENST00000540236 UBE2Q2Q8WVN8 375 aa15.16■□□□□ 0.02
PBX1-212ENST00000540236 ERICH6BQ5W0A0 696 aa15.15■□□□□ 0.02
PBX1-212ENST00000540236 BRPF3Q9ULD4 1205 aa15.12■□□□□ 0.01
PBX1-212ENST00000540236 PAK3O75914 559 aaPredicted RBP15.1■□□□□ 0.01
PBX1-212ENST00000540236 FAM50AQ14320 339 aaKnown RBP15.06■□□□□ 0
PBX1-212ENST00000540236 BAZ1BQ9UIG0 1483 aaKnown RBP15.04■□□□□ -0
PBX1-212ENST00000540236 PPP4R2Q9NY27 417 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms