RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 EFCAB3Q8N7B9 438 aa3.91□□□□□ -1.78
RNU6-539P-201ENST00000516665 ZBED2Q9BTP6 218 aa3.91□□□□□ -1.78
RNU6-539P-201ENST00000516665 KRTAP9-8Q9BYQ0 159 aa3.91□□□□□ -1.78
RNU6-539P-201ENST00000516665 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.91□□□□□ -1.78
RNU6-539P-201ENST00000516665 KIF3CO14782 793 aa3.9□□□□□ -1.79
RNU6-539P-201ENST00000516665 RASSF7Q02833 373 aa3.9□□□□□ -1.79
RNU6-539P-201ENST00000516665 C2orf72A6NCS6 295 aa3.89□□□□□ -1.79
RNU6-539P-201ENST00000516665 ADAM23O75077 832 aa3.89□□□□□ -1.79
RNU6-539P-201ENST00000516665 PRR20EP86478 221 aa3.89□□□□□ -1.79
RNU6-539P-201ENST00000516665 PRR20CP86479 221 aa3.89□□□□□ -1.79
RNU6-539P-201ENST00000516665 PRR20DP86480 221 aa3.89□□□□□ -1.79
RNU6-539P-201ENST00000516665 PRR20BP86481 221 aa3.89□□□□□ -1.79
RNU6-539P-201ENST00000516665 PRR20AP86496 221 aa3.89□□□□□ -1.79
RNU6-539P-201ENST00000516665 MS4A4AQ96JQ5 239 aa3.89□□□□□ -1.79
RNU6-539P-201ENST00000516665 SNRPBP14678 240 aaKnown RBP3.88□□□□□ -1.79
RNU6-539P-201ENST00000516665 TJAP1Q5JTD0 557 aa3.87□□□□□ -1.79
RNU6-539P-201ENST00000516665 TNFRSF10AO00220 468 aa3.86□□□□□ -1.79
RNU6-539P-201ENST00000516665 CRIPAKQ8N1N5 446 aa3.85□□□□□ -1.79
RNU6-539P-201ENST00000516665 EMID1Q96A84 441 aaPredicted RBP3.85□□□□□ -1.79
RNU6-539P-201ENST00000516665 IGHA1P01876 353 aa3.83□□□□□ -1.8
RNU6-539P-201ENST00000516665 BCL2L12Q9HB09 334 aa3.83□□□□□ -1.8
RNU6-539P-201ENST00000516665 GDF9O60383 454 aa3.81□□□□□ -1.8
RNU6-539P-201ENST00000516665 AXIN1O15169 862 aa3.8□□□□□ -1.8
RNU6-539P-201ENST00000516665 CHRM1P11229 460 aaPredicted RBP3.8□□□□□ -1.8
RNU6-539P-201ENST00000516665 SLC19A1P41440 591 aa3.8□□□□□ -1.8
RNU6-539P-201ENST00000516665 SLC16A10Q8TF71 515 aa3.8□□□□□ -1.8
RNU6-539P-201ENST00000516665 ZNF516Q92618 1163 aa3.8□□□□□ -1.8
RNU6-539P-201ENST00000516665 ZFRQ96KR1 1074 aaKnown RBP3.8□□□□□ -1.8
RNU6-539P-201ENST00000516665 HPS5Q9UPZ3 1129 aa3.8□□□□□ -1.8
RNU6-539P-201ENST00000516665 PTPREP23469 700 aa3.79□□□□□ -1.8
RNU6-539P-201ENST00000516665 SPRYD7Q5W111 196 aa3.79□□□□□ -1.8
RNU6-539P-201ENST00000516665 NKX2-3Q8TAU0 364 aa3.79□□□□□ -1.8
RNU6-539P-201ENST00000516665 MTRQ99707 1265 aa3.79□□□□□ -1.8
RNU6-539P-201ENST00000516665 TSR3Q9UJK0 312 aaKnown RBP3.79□□□□□ -1.8
RNU6-539P-201ENST00000516665 DNMT3AQ9Y6K1 912 aaPredicted RBP3.79□□□□□ -1.8
RNU6-539P-201ENST00000516665 ZNF598Q86UK7 904 aaKnown RBP3.78□□□□□ -1.8
RNU6-539P-201ENST00000516665 ZNF454Q8N9F8 522 aa3.78□□□□□ -1.8
RNU6-539P-201ENST00000516665 IRF7Q92985 503 aa3.78□□□□□ -1.8
RNU6-539P-201ENST00000516665 ERBB4Q15303 1308 aa3.77□□□□□ -1.81
RNU6-539P-201ENST00000516665 PTCD2Q8WV60 388 aaKnown RBP3.77□□□□□ -1.81
RNU6-539P-201ENST00000516665 IL21Q9HBE4 155 aa3.77□□□□□ -1.81
RNU6-539P-201ENST00000516665 VEGFBP49765 207 aa3.76□□□□□ -1.81
RNU6-539P-201ENST00000516665 ZNF697Q5TEC3 545 aa3.76□□□□□ -1.81
RNU6-539P-201ENST00000516665 KRTAP4-5Q9BYR2 181 aa3.76□□□□□ -1.81
RNU6-539P-201ENST00000516665 RABGEF1Q9UJ41 708 aa3.76□□□□□ -1.81
RNU6-539P-201ENST00000516665 PHF8Q9UPP1 1060 aa3.76□□□□□ -1.81
RNU6-539P-201ENST00000516665 AVPP01185 164 aa3.75□□□□□ -1.81
RNU6-539P-201ENST00000516665 PROX2Q3B8N5 592 aa3.75□□□□□ -1.81
RNU6-539P-201ENST00000516665 TRIM47Q96LD4 638 aa3.75□□□□□ -1.81
RNU6-539P-201ENST00000516665 GOLGA2P5Q9HBQ8 144 aa3.75□□□□□ -1.81
RNU6-539P-201ENST00000516665 RNF225M0QZC1 329 aaPredicted RBP3.74□□□□□ -1.81
RNU6-539P-201ENST00000516665 KRTAP4-11Q9BYQ6 195 aa3.74□□□□□ -1.81
RNU6-539P-201ENST00000516665 NXF1Q9UBU9 619 aaKnown RBP3.74□□□□□ -1.81
RNU6-539P-201ENST00000516665 GGCXP38435 758 aa3.73□□□□□ -1.81
RNU6-539P-201ENST00000516665 LAPTM4BQ86VI4 370 aa3.73□□□□□ -1.81
RNU6-539P-201ENST00000516665 GSE1Q14687 1217 aa3.72□□□□□ -1.81
RNU6-539P-201ENST00000516665 ATP13A2Q9NQ11 1180 aa3.72□□□□□ -1.81
RNU6-539P-201ENST00000516665 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.72□□□□□ -1.81
RNU6-539P-201ENST00000516665 FOXK2Q01167 660 aa3.71□□□□□ -1.82
RNU6-539P-201ENST00000516665 CTC1Q2NKJ3 1217 aa3.71□□□□□ -1.82
RNU6-539P-201ENST00000516665 SEPT9Q9UHD8 586 aaPredicted RBP3.71□□□□□ -1.82
RNU6-539P-201ENST00000516665 ARID1BQ8NFD5 2236 aaPredicted RBP3.71□□□□□ -1.82
RNU6-539P-201ENST00000516665 SOX12O15370 315 aa3.7□□□□□ -1.82
RNU6-539P-201ENST00000516665 SMCPP49901 116 aaPredicted RBP3.7□□□□□ -1.82
RNU6-539P-201ENST00000516665 LIAT1Q6ZQX7 453 aa3.7□□□□□ -1.82
RNU6-539P-201ENST00000516665 LRCH3Q96II8 777 aa3.7□□□□□ -1.82
RNU6-539P-201ENST00000516665 TMUB1Q9BVT8 246 aa3.7□□□□□ -1.82
RNU6-539P-201ENST00000516665 H3BM21 787 aa3.69□□□□□ -1.82
RNU6-539P-201ENST00000516665 LAMC2Q13753 1193 aa3.69□□□□□ -1.82
RNU6-539P-201ENST00000516665 RNF223E7ERA6 249 aa3.68□□□□□ -1.82
RNU6-539P-201ENST00000516665 IRS1P35568 1242 aa3.68□□□□□ -1.82
RNU6-539P-201ENST00000516665 K7ELQ4 463 aaPredicted RBP3.67□□□□□ -1.82
RNU6-539P-201ENST00000516665 FOSBP53539 338 aa3.67□□□□□ -1.82
RNU6-539P-201ENST00000516665 TMC2Q8TDI7 906 aa3.67□□□□□ -1.82
RNU6-539P-201ENST00000516665 ADAM33Q9BZ11 813 aa3.67□□□□□ -1.82
RNU6-539P-201ENST00000516665 SENP2Q9HC62 589 aa3.67□□□□□ -1.82
RNU6-539P-201ENST00000516665 ADAMTS8Q9UP79 889 aa3.67□□□□□ -1.82
RNU6-539P-201ENST00000516665 MSTNO14793 375 aa3.66□□□□□ -1.82
RNU6-539P-201ENST00000516665 COBLO75128 1261 aa3.66□□□□□ -1.82
RNU6-539P-201ENST00000516665 PPP4CP60510 307 aa3.66□□□□□ -1.82
RNU6-539P-201ENST00000516665 PKD2L1Q9P0L9 805 aa3.66□□□□□ -1.82
RNU6-539P-201ENST00000516665 FOXC1Q12948 553 aa3.65□□□□□ -1.83
RNU6-539P-201ENST00000516665 NPAS3Q8IXF0 933 aa3.65□□□□□ -1.83
RNU6-539P-201ENST00000516665 SPOCK3Q9BQ16 436 aa3.65□□□□□ -1.83
RNU6-539P-201ENST00000516665 KIAA1468Q9P260 1216 aa3.65□□□□□ -1.83
RNU6-539P-201ENST00000516665 PPP1R3GB7ZBB8 358 aa3.64□□□□□ -1.83
RNU6-539P-201ENST00000516665 COL9A1P20849 921 aa3.63□□□□□ -1.83
RNU6-539P-201ENST00000516665 TOR4AQ9NXH8 423 aa3.63□□□□□ -1.83
RNU6-539P-201ENST00000516665 KIFC2Q96AC6 838 aa3.62□□□□□ -1.83
RNU6-539P-201ENST00000516665 PPEF1O14829 653 aaPredicted RBP3.61□□□□□ -1.83
RNU6-539P-201ENST00000516665 TBC1D12O60347 775 aa3.61□□□□□ -1.83
RNU6-539P-201ENST00000516665 ITGB2P05107 769 aa3.61□□□□□ -1.83
RNU6-539P-201ENST00000516665 FAM98CQ17RN3 349 aaKnown RBP3.61□□□□□ -1.83
RNU6-539P-201ENST00000516665 PLA2G4EQ3MJ16 856 aa3.61□□□□□ -1.83
RNU6-539P-201ENST00000516665 PROCP04070 461 aa3.6□□□□□ -1.83
RNU6-539P-201ENST00000516665 COPS2P61201 443 aa3.59□□□□□ -1.83
RNU6-539P-201ENST00000516665 FBXO22Q8NEZ5 403 aa3.59□□□□□ -1.83
RNU6-539P-201ENST00000516665 ZDHHC16Q969W1 377 aa3.59□□□□□ -1.83
RNU6-539P-201ENST00000516665 KANK3Q6NY19 840 aa3.57□□□□□ -1.84
RNU6-539P-201ENST00000516665 ANKLE1Q8NAG6 615 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms