RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 AEBP2Q6ZN18 517 aaPredicted RBP11.83□□□□□ -0.52
RNU6-539P-201ENST00000516665 POTEDQ86YR6 584 aa11.14□□□□□ -0.63
RNU6-539P-201ENST00000516665 CHIC1Q5VXU3 224 aa10.9□□□□□ -0.66
RNU6-539P-201ENST00000516665 SENP3Q9H4L4 574 aaPredicted RBP10.15□□□□□ -0.78
RNU6-539P-201ENST00000516665 PHF23Q9BUL5 403 aaPredicted RBP9.9□□□□□ -0.82
RNU6-539P-201ENST00000516665 FOXD1Q16676 465 aa9.67□□□□□ -0.86
RNU6-539P-201ENST00000516665 MSH5O43196 834 aa9.38□□□□□ -0.91
RNU6-539P-201ENST00000516665 CACNB1Q02641 598 aaPredicted RBP8.78□□□□□ -1
RNU6-539P-201ENST00000516665 PIAS4Q8N2W9 510 aaPredicted RBP8.75□□□□□ -1.01
RNU6-539P-201ENST00000516665 POTEHQ6S545 545 aa8.49□□□□□ -1.05
RNU6-539P-201ENST00000516665 PPP6R1Q9UPN7 881 aa8.23□□□□□ -1.09
RNU6-539P-201ENST00000516665 ADRA2BP18089 450 aa8.12□□□□□ -1.11
RNU6-539P-201ENST00000516665 RNF39Q9H2S5 420 aa7.96□□□□□ -1.14
RNU6-539P-201ENST00000516665 DMRT2Q9Y5R5 561 aa7.9□□□□□ -1.14
RNU6-539P-201ENST00000516665 MAPK8IP2Q13387 824 aaPredicted RBP7.82□□□□□ -1.16
RNU6-539P-201ENST00000516665 C1QBPQ07021 282 aaKnown RBP7.72□□□□□ -1.17
RNU6-539P-201ENST00000516665 DCAF8L1A6NGE4 600 aa7.68□□□□□ -1.18
RNU6-539P-201ENST00000516665 PLSCR2Q9NRY7 297 aa7.51□□□□□ -1.21
RNU6-539P-201ENST00000516665 PLPPR3Q6T4P5 718 aa7.5□□□□□ -1.21
RNU6-539P-201ENST00000516665 SP7Q8TDD2 431 aaPredicted RBP7.43□□□□□ -1.22
RNU6-539P-201ENST00000516665 SCAF1Q9H7N4 1312 aaKnown RBP7.27□□□□□ -1.24
RNU6-539P-201ENST00000516665 HOXD11P31277 338 aaPredicted RBP7.16□□□□□ -1.26
RNU6-539P-201ENST00000516665 DSG3P32926 999 aa7.09□□□□□ -1.27
RNU6-539P-201ENST00000516665 CHRDL2Q6WN34 429 aa7.08□□□□□ -1.28
RNU6-539P-201ENST00000516665 DNAJC5BQ9UF47 199 aa7.03□□□□□ -1.28
RNU6-539P-201ENST00000516665 LHX8Q68G74 356 aa6.95□□□□□ -1.3
RNU6-539P-201ENST00000516665 SPINK5Q9NQ38 1064 aaPredicted RBP6.88□□□□□ -1.31
RNU6-539P-201ENST00000516665 CAPN15O75808 1086 aa6.87□□□□□ -1.31
RNU6-539P-201ENST00000516665 HAX1O00165 279 aa6.85□□□□□ -1.31
RNU6-539P-201ENST00000516665 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.83□□□□□ -1.32
RNU6-539P-201ENST00000516665 RNF216Q9NWF9 866 aaPredicted RBP6.78□□□□□ -1.32
RNU6-539P-201ENST00000516665 EVX2Q03828 476 aa6.76□□□□□ -1.33
RNU6-539P-201ENST00000516665 RBM42Q9BTD8 480 aaKnown RBP6.71□□□□□ -1.34
RNU6-539P-201ENST00000516665 PIP4P2Q8N4L2 257 aa6.69□□□□□ -1.34
RNU6-539P-201ENST00000516665 ABCB7O75027 752 aa6.66□□□□□ -1.34
RNU6-539P-201ENST00000516665 POTEMA6NI47 508 aa6.63□□□□□ -1.35
RNU6-539P-201ENST00000516665 U3KPZ7 1027 aaPredicted RBP6.61□□□□□ -1.35
RNU6-539P-201ENST00000516665 POTEGQ6S5H5 508 aa6.57□□□□□ -1.36
RNU6-539P-201ENST00000516665 CNKSR2Q8WXI2 1034 aa6.57□□□□□ -1.36
RNU6-539P-201ENST00000516665 TRHP20396 242 aaPredicted RBP6.5□□□□□ -1.37
RNU6-539P-201ENST00000516665 PPP4R3CPQ6ZMV5 832 aa6.48□□□□□ -1.37
RNU6-539P-201ENST00000516665 GABBR2O75899 941 aa6.47□□□□□ -1.37
RNU6-539P-201ENST00000516665 PCDH10Q9P2E7 1040 aa6.45□□□□□ -1.38
RNU6-539P-201ENST00000516665 FXR2P51116 673 aaKnown RBP eCLIP6.43□□□□□ -1.38
RNU6-539P-201ENST00000516665 POTEIP0CG38 1075 aa6.37□□□□□ -1.39
RNU6-539P-201ENST00000516665 ZNF219Q9P2Y4 722 aaPredicted RBP6.37□□□□□ -1.39
RNU6-539P-201ENST00000516665 AKT1S1Q96B36 256 aa6.34□□□□□ -1.39
RNU6-539P-201ENST00000516665 REM2Q8IYK8 340 aaPredicted RBP6.33□□□□□ -1.4
RNU6-539P-201ENST00000516665 OTUD5Q96G74 571 aa6.32□□□□□ -1.4
RNU6-539P-201ENST00000516665 PITPNM1O00562 1244 aa6.31□□□□□ -1.4
RNU6-539P-201ENST00000516665 C19orf67A6NJJ6 358 aa6.28□□□□□ -1.4
RNU6-539P-201ENST00000516665 LCE2DQ5TA82 110 aaPredicted RBP6.19□□□□□ -1.42
RNU6-539P-201ENST00000516665 POTEB2H3BUK9 544 aa6.15□□□□□ -1.42
RNU6-539P-201ENST00000516665 APLP2Q06481 763 aa6.14□□□□□ -1.43
RNU6-539P-201ENST00000516665 PRKAR2AP13861 404 aaKnown RBP6.12□□□□□ -1.43
RNU6-539P-201ENST00000516665 POLA2Q14181 598 aa6.06□□□□□ -1.44
RNU6-539P-201ENST00000516665 MMRN1Q13201 1228 aa6.04□□□□□ -1.44
RNU6-539P-201ENST00000516665 CDAN1Q8IWY9 1227 aa6.04□□□□□ -1.44
RNU6-539P-201ENST00000516665 FAM163AQ96GL9 167 aaPredicted RBP6.04□□□□□ -1.44
RNU6-539P-201ENST00000516665 DCBLD2Q96PD2 775 aa6.03□□□□□ -1.44
RNU6-539P-201ENST00000516665 OSCARQ8IYS5 282 aa5.96□□□□□ -1.46
RNU6-539P-201ENST00000516665 SPNS2Q8IVW8 549 aa5.93□□□□□ -1.46
RNU6-539P-201ENST00000516665 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.89□□□□□ -1.47
RNU6-539P-201ENST00000516665 POTEJP0CG39 1038 aa5.89□□□□□ -1.47
RNU6-539P-201ENST00000516665 HNRNPUL2Q1KMD3 747 aaKnown RBP5.89□□□□□ -1.47
RNU6-539P-201ENST00000516665 SLC4A2P04920 1241 aa5.87□□□□□ -1.47
RNU6-539P-201ENST00000516665 CD44P16070 742 aaKnown RBP5.86□□□□□ -1.47
RNU6-539P-201ENST00000516665 CHADLQ6NUI6 762 aa5.86□□□□□ -1.47
RNU6-539P-201ENST00000516665 SAMD1Q6SPF0 538 aaPredicted RBP5.85□□□□□ -1.47
RNU6-539P-201ENST00000516665 NPM3O75607 178 aaKnown RBP5.83□□□□□ -1.48
RNU6-539P-201ENST00000516665 CLCN6P51797 869 aa5.83□□□□□ -1.48
RNU6-539P-201ENST00000516665 CLEC11AQ9Y240 323 aa5.81□□□□□ -1.48
RNU6-539P-201ENST00000516665 NCBP3Q53F19 620 aaKnown RBP5.8□□□□□ -1.48
RNU6-539P-201ENST00000516665 GALR2O43603 387 aaPredicted RBP5.76□□□□□ -1.49
RNU6-539P-201ENST00000516665 PELP1Q8IZL8 1130 aaKnown RBP5.76□□□□□ -1.49
RNU6-539P-201ENST00000516665 ZBTB12Q9Y330 459 aaPredicted RBP5.75□□□□□ -1.49
RNU6-539P-201ENST00000516665 MAMSTRQ6ZN01 415 aa5.74□□□□□ -1.49
RNU6-539P-201ENST00000516665 SPDYE1Q8NFV5 336 aaPredicted RBP5.69□□□□□ -1.5
RNU6-539P-201ENST00000516665 METRNQ9UJH8 293 aa5.69□□□□□ -1.5
RNU6-539P-201ENST00000516665 ZNF579Q8NAF0 562 aaKnown RBP5.68□□□□□ -1.5
RNU6-539P-201ENST00000516665 SCUBE2Q9NQ36 999 aa5.68□□□□□ -1.5
RNU6-539P-201ENST00000516665 ST18O60284 1047 aa5.62□□□□□ -1.51
RNU6-539P-201ENST00000516665 ZRANB1Q9UGI0 708 aa5.6□□□□□ -1.51
RNU6-539P-201ENST00000516665 FARP1Q9Y4F1 1045 aaPredicted RBP5.59□□□□□ -1.51
RNU6-539P-201ENST00000516665 C7P10643 843 aa5.57□□□□□ -1.52
RNU6-539P-201ENST00000516665 SLC39A7Q92504 469 aa5.56□□□□□ -1.52
RNU6-539P-201ENST00000516665 SPDYE2BA6NHP3 402 aa5.52□□□□□ -1.53
RNU6-539P-201ENST00000516665 SPDYE6P0CI01 402 aa5.52□□□□□ -1.53
RNU6-539P-201ENST00000516665 SPDYE2Q495Y8 402 aa5.52□□□□□ -1.53
RNU6-539P-201ENST00000516665 PRR29P0C7W0 189 aa5.51□□□□□ -1.53
RNU6-539P-201ENST00000516665 ASTLQ6HA08 431 aaPredicted RBP5.5□□□□□ -1.53
RNU6-539P-201ENST00000516665 ATMINO43313 823 aaPredicted RBP5.48□□□□□ -1.53
RNU6-539P-201ENST00000516665 KRTAP3-3Q9BYR6 98 aa5.48□□□□□ -1.53
RNU6-539P-201ENST00000516665 KRTAP3-2Q9BYR7 98 aa5.48□□□□□ -1.53
RNU6-539P-201ENST00000516665 POTEFA5A3E0 1075 aa5.47□□□□□ -1.53
RNU6-539P-201ENST00000516665 PHF12Q96QT6 1004 aa5.47□□□□□ -1.53
RNU6-539P-201ENST00000516665 MARVELD3Q96A59 401 aa5.45□□□□□ -1.54
RNU6-539P-201ENST00000516665 ATF5Q9Y2D1 282 aaPredicted RBP5.44□□□□□ -1.54
RNU6-539P-201ENST00000516665 TMEM121BQ9BXQ6 578 aaPredicted RBP5.4□□□□□ -1.54
RNU6-539P-201ENST00000516665 SLAIN1Q8ND83 568 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms