RNA–Protein interactions for RNA: ENST00000513873.1

CLDND1-228, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 538 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-228ENST00000513873 GFRA3O60609 400 aa9.72□□□□□ -0.85
CLDND1-228ENST00000513873 DSG2Q14126 1118 aa9.72□□□□□ -0.85
CLDND1-228ENST00000513873 NYAP1Q6ZVC0 841 aa9.72□□□□□ -0.85
CLDND1-228ENST00000513873 ZBED2Q9BTP6 218 aa9.72□□□□□ -0.85
CLDND1-228ENST00000513873 MFSD10Q14728 455 aa9.71□□□□□ -0.86
CLDND1-228ENST00000513873 KDM2AQ9Y2K7 1162 aa9.71□□□□□ -0.86
CLDND1-228ENST00000513873 KCNC4Q03721 635 aa9.7□□□□□ -0.86
CLDND1-228ENST00000513873 E2F4Q16254 413 aa9.7□□□□□ -0.86
CLDND1-228ENST00000513873 P3H3Q8IVL6 736 aa9.69□□□□□ -0.86
CLDND1-228ENST00000513873 FOSBP53539 338 aa9.64□□□□□ -0.87
CLDND1-228ENST00000513873 UPF1Q92900 1129 aaKnown RBP eCLIP9.64□□□□□ -0.87
CLDND1-228ENST00000513873 ZNF787Q6DD87 383 aa9.63□□□□□ -0.87
CLDND1-228ENST00000513873 OXER1Q8TDS5 423 aa9.63□□□□□ -0.87
CLDND1-228ENST00000513873 MAP3K9P80192 1104 aa9.62□□□□□ -0.87
CLDND1-228ENST00000513873 ZDHHC16Q969W1 377 aa9.62□□□□□ -0.87
CLDND1-228ENST00000513873 NRG2O14511 850 aaPredicted RBP9.61□□□□□ -0.87
CLDND1-228ENST00000513873 JPH4Q96JJ6 628 aa9.61□□□□□ -0.87
CLDND1-228ENST00000513873 RABGEF1Q9UJ41 708 aa9.61□□□□□ -0.87
CLDND1-228ENST00000513873 BCAMP50895 628 aa9.6□□□□□ -0.87
CLDND1-228ENST00000513873 CAMK2BQ13554 666 aa9.6□□□□□ -0.87
CLDND1-228ENST00000513873 SOWAHBA6NEL2 793 aa9.59□□□□□ -0.87
CLDND1-228ENST00000513873 LAPTM4BQ86VI4 370 aa9.59□□□□□ -0.87
CLDND1-228ENST00000513873 ARHGEF1Q92888 912 aaKnown RBP9.58□□□□□ -0.88
CLDND1-228ENST00000513873 LCE2BO14633 110 aa9.57□□□□□ -0.88
CLDND1-228ENST00000513873 KCNV2Q8TDN2 545 aa9.57□□□□□ -0.88
CLDND1-228ENST00000513873 PPP1R3GB7ZBB8 358 aa9.55□□□□□ -0.88
CLDND1-228ENST00000513873 DPYSL4O14531 572 aa9.55□□□□□ -0.88
CLDND1-228ENST00000513873 NBR1Q14596 966 aa9.55□□□□□ -0.88
CLDND1-228ENST00000513873 ADAM33Q9BZ11 813 aa9.55□□□□□ -0.88
CLDND1-228ENST00000513873 EMILIN3Q9NT22 766 aa9.54□□□□□ -0.88
CLDND1-228ENST00000513873 WBP1LQ9NX94 342 aa9.54□□□□□ -0.88
CLDND1-228ENST00000513873 SPDYE16A6NNV3 312 aaPredicted RBP9.53□□□□□ -0.88
CLDND1-228ENST00000513873 ARIH1Q9Y4X5 557 aaPredicted RBP9.53□□□□□ -0.88
CLDND1-228ENST00000513873 ZFRQ96KR1 1074 aaKnown RBP9.52□□□□□ -0.89
CLDND1-228ENST00000513873 PRKD2Q9BZL6 878 aa9.52□□□□□ -0.89
CLDND1-228ENST00000513873 ZNF775Q96BV0 537 aaPredicted RBP9.51□□□□□ -0.89
CLDND1-228ENST00000513873 ANO8Q9HCE9 1232 aaPredicted RBP9.51□□□□□ -0.89
CLDND1-228ENST00000513873 EVI5O60447 810 aa9.5□□□□□ -0.89
CLDND1-228ENST00000513873 PROX2Q3B8N5 592 aa9.49□□□□□ -0.89
CLDND1-228ENST00000513873 TSR3Q9UJK0 312 aaKnown RBP9.49□□□□□ -0.89
CLDND1-228ENST00000513873 NISCHQ9Y2I1 1504 aa9.49□□□□□ -0.89
CLDND1-228ENST00000513873 TULP1O00294 542 aaPredicted RBP9.48□□□□□ -0.89
CLDND1-228ENST00000513873 BCANQ96GW7 911 aa9.48□□□□□ -0.89
CLDND1-228ENST00000513873 V9GY48 417 aaPredicted RBP9.47□□□□□ -0.89
CLDND1-228ENST00000513873 SMYD5Q6GMV2 418 aa9.46□□□□□ -0.9
CLDND1-228ENST00000513873 LRCH3Q96II8 777 aa9.46□□□□□ -0.9
CLDND1-228ENST00000513873 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.46□□□□□ -0.9
CLDND1-228ENST00000513873 KIAA1468Q9P260 1216 aa9.46□□□□□ -0.9
CLDND1-228ENST00000513873 PDIA6Q15084 440 aa9.45□□□□□ -0.9
CLDND1-228ENST00000513873 PDZRN3Q9UPQ7 1066 aa9.45□□□□□ -0.9
CLDND1-228ENST00000513873 HPS5Q9UPZ3 1129 aa9.45□□□□□ -0.9
CLDND1-228ENST00000513873 ONECUT3O60422 494 aaPredicted RBP9.43□□□□□ -0.9
CLDND1-228ENST00000513873 FBXW7Q969H0 707 aa9.43□□□□□ -0.9
CLDND1-228ENST00000513873 FAM98CQ17RN3 349 aaKnown RBP9.42□□□□□ -0.9
CLDND1-228ENST00000513873 SEPT9Q9UHD8 586 aaPredicted RBP9.41□□□□□ -0.9
CLDND1-228ENST00000513873 GRXCR2A6NFK2 248 aa9.4□□□□□ -0.9
CLDND1-228ENST00000513873 SEMA3EO15041 775 aa9.4□□□□□ -0.9
CLDND1-228ENST00000513873 COL9A1P20849 921 aa9.4□□□□□ -0.9
CLDND1-228ENST00000513873 PPP4CP60510 307 aa9.39□□□□□ -0.91
CLDND1-228ENST00000513873 DDX12PQ92771 950 aa9.39□□□□□ -0.91
CLDND1-228ENST00000513873 TYW1BQ6NUM6 668 aa9.38□□□□□ -0.91
CLDND1-228ENST00000513873 PCDHGA10Q9Y5H3 936 aa9.38□□□□□ -0.91
CLDND1-228ENST00000513873 PHF14O94880 888 aa9.37□□□□□ -0.91
CLDND1-228ENST00000513873 PPP1R18Q6NYC8 613 aa9.37□□□□□ -0.91
CLDND1-228ENST00000513873 EPAS1Q99814 870 aa9.37□□□□□ -0.91
CLDND1-228ENST00000513873 TESPA1A2RU30 521 aaPredicted RBP9.35□□□□□ -0.91
CLDND1-228ENST00000513873 GGCXP38435 758 aa9.34□□□□□ -0.91
CLDND1-228ENST00000513873 IL21Q9HBE4 155 aa9.34□□□□□ -0.91
CLDND1-228ENST00000513873 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.34□□□□□ -0.91
CLDND1-228ENST00000513873 TRIM6-TRIM34B2RNG4 842 aa9.33□□□□□ -0.92
CLDND1-228ENST00000513873 MLLT3P42568 568 aaPredicted RBP9.33□□□□□ -0.92
CLDND1-228ENST00000513873 TJAP1Q5JTD0 557 aa9.32□□□□□ -0.92
CLDND1-228ENST00000513873 PKDCCQ504Y2 493 aa9.31□□□□□ -0.92
CLDND1-228ENST00000513873 MAP3K7O43318 606 aa9.3□□□□□ -0.92
CLDND1-228ENST00000513873 RBM33Q96EV2 1170 aaKnown RBP9.3□□□□□ -0.92
CLDND1-228ENST00000513873 PACS2Q86VP3 889 aa9.29□□□□□ -0.92
CLDND1-228ENST00000513873 MTRQ99707 1265 aa9.29□□□□□ -0.92
CLDND1-228ENST00000513873 NUTM2FA1L443 756 aa9.28□□□□□ -0.92
CLDND1-228ENST00000513873 C6orf132Q5T0Z8 1188 aa9.28□□□□□ -0.92
CLDND1-228ENST00000513873 OSBPP22059 807 aa9.27□□□□□ -0.93
CLDND1-228ENST00000513873 EN1Q05925 392 aaPredicted RBP9.27□□□□□ -0.93
CLDND1-228ENST00000513873 RBM26Q5T8P6 1007 aaKnown RBP9.24□□□□□ -0.93
CLDND1-228ENST00000513873 LMOD2Q6P5Q4 547 aa9.24□□□□□ -0.93
CLDND1-228ENST00000513873 TREML4Q6UXN2 200 aa9.24□□□□□ -0.93
CLDND1-228ENST00000513873 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.24□□□□□ -0.93
CLDND1-228ENST00000513873 DGAT1O75907 488 aa9.23□□□□□ -0.93
CLDND1-228ENST00000513873 HDGFP51858 240 aaKnown RBP9.22□□□□□ -0.93
CLDND1-228ENST00000513873 GPIHBP1Q8IV16 184 aa9.22□□□□□ -0.93
CLDND1-228ENST00000513873 CERKQ8TCT0 537 aa9.22□□□□□ -0.93
CLDND1-228ENST00000513873 TMUB1Q9BVT8 246 aa9.21□□□□□ -0.94
CLDND1-228ENST00000513873 MYT1Q01538 1121 aa9.2□□□□□ -0.94
CLDND1-228ENST00000513873 SAMD7Q7Z3H4 446 aa9.2□□□□□ -0.94
CLDND1-228ENST00000513873 FCHSD2O94868 740 aa9.19□□□□□ -0.94
CLDND1-228ENST00000513873 TSR1Q2NL82 804 aaKnown RBP9.19□□□□□ -0.94
CLDND1-228ENST00000513873 NECTIN2Q92692 538 aa9.19□□□□□ -0.94
CLDND1-228ENST00000513873 ABCC9O60706 1549 aa9.18□□□□□ -0.94
CLDND1-228ENST00000513873 ZNF516Q92618 1163 aa9.18□□□□□ -0.94
CLDND1-228ENST00000513873 STK17AQ9UEE5 414 aa9.18□□□□□ -0.94
CLDND1-228ENST00000513873 RNF40O75150 1001 aa9.17□□□□□ -0.94
CLDND1-228ENST00000513873 PRIM1P49642 420 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms