RNA–Protein interactions for RNA: ENST00000513873.1

CLDND1-228, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 538 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-228ENST00000513873 AEBP2Q6ZN18 517 aaPredicted RBP24.75■■□□□ 1.55
CLDND1-228ENST00000513873 CHIC1Q5VXU3 224 aa23.37■■□□□ 1.33
CLDND1-228ENST00000513873 SENP3Q9H4L4 574 aaPredicted RBP21.44■■□□□ 1.02
CLDND1-228ENST00000513873 PHF23Q9BUL5 403 aaPredicted RBP20.98■□□□□ 0.95
CLDND1-228ENST00000513873 FOXD1Q16676 465 aa19.92■□□□□ 0.78
CLDND1-228ENST00000513873 POTEDQ86YR6 584 aa19.59■□□□□ 0.73
CLDND1-228ENST00000513873 MSH5O43196 834 aa19.07■□□□□ 0.64
CLDND1-228ENST00000513873 PIAS4Q8N2W9 510 aaPredicted RBP18.57■□□□□ 0.56
CLDND1-228ENST00000513873 PLPPR3Q6T4P5 718 aa18.16■□□□□ 0.5
CLDND1-228ENST00000513873 PPP6R1Q9UPN7 881 aa18.05■□□□□ 0.48
CLDND1-228ENST00000513873 ADRA2BP18089 450 aa18.01■□□□□ 0.47
CLDND1-228ENST00000513873 DMRT2Q9Y5R5 561 aa16.83■□□□□ 0.28
CLDND1-228ENST00000513873 CACNB1Q02641 598 aaPredicted RBP16.77■□□□□ 0.28
CLDND1-228ENST00000513873 SCAF1Q9H7N4 1312 aaKnown RBP16.72■□□□□ 0.27
CLDND1-228ENST00000513873 MAPK8IP2Q13387 824 aaPredicted RBP16.72■□□□□ 0.27
CLDND1-228ENST00000513873 DCAF8L1A6NGE4 600 aa16.31■□□□□ 0.2
CLDND1-228ENST00000513873 RNF39Q9H2S5 420 aa16.1■□□□□ 0.17
CLDND1-228ENST00000513873 HOXD11P31277 338 aaPredicted RBP15.92■□□□□ 0.14
CLDND1-228ENST00000513873 C1QBPQ07021 282 aaKnown RBP15.92■□□□□ 0.14
CLDND1-228ENST00000513873 PPP4R3CPQ6ZMV5 832 aa15.77■□□□□ 0.12
CLDND1-228ENST00000513873 RNF216Q9NWF9 866 aaPredicted RBP15.69■□□□□ 0.1
CLDND1-228ENST00000513873 CNKSR2Q8WXI2 1034 aa15.68■□□□□ 0.1
CLDND1-228ENST00000513873 DNAJC5BQ9UF47 199 aa15.57■□□□□ 0.08
CLDND1-228ENST00000513873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLDND1-228ENST00000513873 POTEHQ6S545 545 aa15.28■□□□□ 0.04
CLDND1-228ENST00000513873 NCBP3Q53F19 620 aaKnown RBP15.12■□□□□ 0.01
CLDND1-228ENST00000513873 CAPN15O75808 1086 aa14.89□□□□□ -0.03
CLDND1-228ENST00000513873 DSG3P32926 999 aa14.84□□□□□ -0.03
CLDND1-228ENST00000513873 U3KPZ7 1027 aaPredicted RBP14.76□□□□□ -0.05
CLDND1-228ENST00000513873 SPINK5Q9NQ38 1064 aaPredicted RBP14.74□□□□□ -0.05
CLDND1-228ENST00000513873 NPM3O75607 178 aaKnown RBP14.71□□□□□ -0.05
CLDND1-228ENST00000513873 APLP2Q06481 763 aa14.56□□□□□ -0.08
CLDND1-228ENST00000513873 TRHP20396 242 aaPredicted RBP14.48□□□□□ -0.09
CLDND1-228ENST00000513873 ZNF219Q9P2Y4 722 aaPredicted RBP14.46□□□□□ -0.09
CLDND1-228ENST00000513873 ABCB7O75027 752 aa14.41□□□□□ -0.1
CLDND1-228ENST00000513873 RBM42Q9BTD8 480 aaKnown RBP14.35□□□□□ -0.11
CLDND1-228ENST00000513873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.34□□□□□ -0.11
CLDND1-228ENST00000513873 HNRNPUL2Q1KMD3 747 aaKnown RBP14.34□□□□□ -0.11
CLDND1-228ENST00000513873 KCNA4P22459 653 aa14.27□□□□□ -0.13
CLDND1-228ENST00000513873 CHRDL2Q6WN34 429 aa14.21□□□□□ -0.13
CLDND1-228ENST00000513873 SAMD1Q6SPF0 538 aaPredicted RBP14.18□□□□□ -0.14
CLDND1-228ENST00000513873 SLC4A2P04920 1241 aa14.15□□□□□ -0.14
CLDND1-228ENST00000513873 SP7Q8TDD2 431 aaPredicted RBP14.03□□□□□ -0.16
CLDND1-228ENST00000513873 POLA2Q14181 598 aa13.91□□□□□ -0.18
CLDND1-228ENST00000513873 AKT1S1Q96B36 256 aa13.81□□□□□ -0.2
CLDND1-228ENST00000513873 HAX1O00165 279 aa13.72□□□□□ -0.21
CLDND1-228ENST00000513873 MYCNP04198 464 aaPredicted RBP13.72□□□□□ -0.21
CLDND1-228ENST00000513873 ZBTB12Q9Y330 459 aaPredicted RBP13.7□□□□□ -0.22
CLDND1-228ENST00000513873 SLC4A1APQ9BWU0 796 aaKnown RBP13.68□□□□□ -0.22
CLDND1-228ENST00000513873 PIP4P2Q8N4L2 257 aa13.67□□□□□ -0.22
CLDND1-228ENST00000513873 REM2Q8IYK8 340 aaPredicted RBP13.63□□□□□ -0.23
CLDND1-228ENST00000513873 FXR2P51116 673 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLDND1-228ENST00000513873 PITPNM1O00562 1244 aa13.47□□□□□ -0.25
CLDND1-228ENST00000513873 OSCARQ8IYS5 282 aa13.45□□□□□ -0.26
CLDND1-228ENST00000513873 EHMT2Q96KQ7 1210 aa13.33□□□□□ -0.28
CLDND1-228ENST00000513873 ATF5Q9Y2D1 282 aaPredicted RBP13.28□□□□□ -0.28
CLDND1-228ENST00000513873 EVX2Q03828 476 aa13.27□□□□□ -0.29
CLDND1-228ENST00000513873 FOXD4L1Q9NU39 408 aa13.2□□□□□ -0.3
CLDND1-228ENST00000513873 PRKAR2AP13861 404 aaKnown RBP13.17□□□□□ -0.3
CLDND1-228ENST00000513873 LHX8Q68G74 356 aa13.16□□□□□ -0.3
CLDND1-228ENST00000513873 SPDYE2BA6NHP3 402 aa13.13□□□□□ -0.31
CLDND1-228ENST00000513873 SPDYE6P0CI01 402 aa13.13□□□□□ -0.31
CLDND1-228ENST00000513873 SPDYE2Q495Y8 402 aa13.13□□□□□ -0.31
CLDND1-228ENST00000513873 SPDYE1Q8NFV5 336 aaPredicted RBP13.11□□□□□ -0.31
CLDND1-228ENST00000513873 CLEC11AQ9Y240 323 aa13.11□□□□□ -0.31
CLDND1-228ENST00000513873 FBLN2P98095 1184 aa13.08□□□□□ -0.32
CLDND1-228ENST00000513873 C19orf67A6NJJ6 358 aa13.07□□□□□ -0.32
CLDND1-228ENST00000513873 CSRNP3Q8WYN3 585 aa13.07□□□□□ -0.32
CLDND1-228ENST00000513873 GABBR2O75899 941 aa13.06□□□□□ -0.32
CLDND1-228ENST00000513873 ZBTB22O15209 634 aa13.04□□□□□ -0.32
CLDND1-228ENST00000513873 PLSCR2Q9NRY7 297 aa12.94□□□□□ -0.34
CLDND1-228ENST00000513873 ZNF692Q9BU19 519 aaPredicted RBP12.89□□□□□ -0.35
CLDND1-228ENST00000513873 ATXN8OSP0DMR3 200 aa12.88□□□□□ -0.35
CLDND1-228ENST00000513873 PRR29P0C7W0 189 aa12.81□□□□□ -0.36
CLDND1-228ENST00000513873 CHADLQ6NUI6 762 aa12.81□□□□□ -0.36
CLDND1-228ENST00000513873 CLCN6P51797 869 aa12.79□□□□□ -0.36
CLDND1-228ENST00000513873 SSUH2Q9Y2M2 353 aa12.79□□□□□ -0.36
CLDND1-228ENST00000513873 CD44P16070 742 aaKnown RBP12.73□□□□□ -0.37
CLDND1-228ENST00000513873 DCBLD2Q96PD2 775 aa12.71□□□□□ -0.37
CLDND1-228ENST00000513873 POTEIP0CG38 1075 aa12.66□□□□□ -0.38
CLDND1-228ENST00000513873 MKRN4PQ13434 485 aaPredicted RBP12.64□□□□□ -0.39
CLDND1-228ENST00000513873 PABPN1Q86U42 306 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLDND1-228ENST00000513873 FARP1Q9Y4F1 1045 aaPredicted RBP12.61□□□□□ -0.39
CLDND1-228ENST00000513873 ZNF579Q8NAF0 562 aaKnown RBP12.46□□□□□ -0.41
CLDND1-228ENST00000513873 ZRANB1Q9UGI0 708 aa12.46□□□□□ -0.41
CLDND1-228ENST00000513873 POTEMA6NI47 508 aa12.43□□□□□ -0.42
CLDND1-228ENST00000513873 OTUD5Q96G74 571 aa12.39□□□□□ -0.43
CLDND1-228ENST00000513873 POTEGQ6S5H5 508 aa12.36□□□□□ -0.43
CLDND1-228ENST00000513873 PCDH10Q9P2E7 1040 aa12.36□□□□□ -0.43
CLDND1-228ENST00000513873 PAK3O75914 559 aaPredicted RBP12.35□□□□□ -0.43
CLDND1-228ENST00000513873 GALR2O43603 387 aaPredicted RBP12.31□□□□□ -0.44
CLDND1-228ENST00000513873 STAG3Q9UJ98 1225 aa12.26□□□□□ -0.45
CLDND1-228ENST00000513873 POTEB2H3BUK9 544 aa12.23□□□□□ -0.45
CLDND1-228ENST00000513873 CREBZFQ9NS37 354 aa12.2□□□□□ -0.46
CLDND1-228ENST00000513873 MAMSTRQ6ZN01 415 aa12.19□□□□□ -0.46
CLDND1-228ENST00000513873 PHF12Q96QT6 1004 aa12.15□□□□□ -0.46
CLDND1-228ENST00000513873 NPM1P06748 294 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLDND1-228ENST00000513873 SLC39A7Q92504 469 aa12.12□□□□□ -0.47
CLDND1-228ENST00000513873 METRNQ9UJH8 293 aa12.12□□□□□ -0.47
CLDND1-228ENST00000513873 C7P10643 843 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms