RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CCDC70Q6NSX1 233 aa4.51□□□□□ -1.69
USP53-205ENST00000509769 ZNF771Q7L3S4 317 aaPredicted RBP4.51□□□□□ -1.69
USP53-205ENST00000509769 ADAMTSL3P82987 1691 aa4.51□□□□□ -1.69
USP53-205ENST00000509769 DCTN1Q14203 1278 aa4.51□□□□□ -1.69
USP53-205ENST00000509769 ARGLU1Q9NWB6 273 aaPredicted RBP4.51□□□□□ -1.69
USP53-205ENST00000509769 LTBP4Q8N2S1 1624 aa4.51□□□□□ -1.69
USP53-205ENST00000509769 DDX11L8A8MPP1 907 aa4.5□□□□□ -1.69
USP53-205ENST00000509769 POLR3GO15318 223 aaPredicted RBP4.5□□□□□ -1.69
USP53-205ENST00000509769 CCDC34Q96HJ3 373 aa4.5□□□□□ -1.69
USP53-205ENST00000509769 FAM107BQ9H098 131 aa4.5□□□□□ -1.69
USP53-205ENST00000509769 WRNQ14191 1432 aaPredicted RBP eCLIP4.5□□□□□ -1.69
USP53-205ENST00000509769 MAP3K4Q9Y6R4 1608 aa4.5□□□□□ -1.69
USP53-205ENST00000509769 EPRSP07814 1512 aaKnown RBP4.5□□□□□ -1.69
USP53-205ENST00000509769 CHMP4CQ96CF2 233 aa4.5□□□□□ -1.69
USP53-205ENST00000509769 ARAP3Q8WWN8 1544 aa4.5□□□□□ -1.69
USP53-205ENST00000509769 FANCIQ9NVI1 1328 aa4.5□□□□□ -1.69
USP53-205ENST00000509769 HMGN5P82970 282 aaKnown RBP4.49□□□□□ -1.69
USP53-205ENST00000509769 RRP12Q5JTH9 1297 aaKnown RBP4.49□□□□□ -1.69
USP53-205ENST00000509769 CTR9Q6PD62 1173 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 KIF3AQ9Y496 699 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 CD109Q6YHK3 1445 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 ERCC4Q92889 916 aaPredicted RBP4.49□□□□□ -1.69
USP53-205ENST00000509769 WIZO95785 1651 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 PKD2Q13563 968 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 HSCBQ8IWL3 235 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 ADCY10Q96PN6 1610 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 NOC3LQ8WTT2 800 aaKnown RBP4.49□□□□□ -1.69
USP53-205ENST00000509769 WDR7Q9Y4E6 1490 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 KIF16BQ96L93 1317 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 UACAQ9BZF9 1416 aa4.49□□□□□ -1.69
USP53-205ENST00000509769 ABCA5Q8WWZ7 1642 aa4.48□□□□□ -1.69
USP53-205ENST00000509769 CLGNO14967 610 aa4.48□□□□□ -1.69
USP53-205ENST00000509769 DEF6Q9H4E7 631 aa4.48□□□□□ -1.69
USP53-205ENST00000509769 DIAPH3Q9NSV4 1193 aa4.48□□□□□ -1.69
USP53-205ENST00000509769 FAM50AQ14320 339 aaKnown RBP4.48□□□□□ -1.69
USP53-205ENST00000509769 WDR43Q15061 677 aaKnown RBP eCLIP4.48□□□□□ -1.69
USP53-205ENST00000509769 PPARGC1BQ86YN6 1023 aaKnown RBP4.48□□□□□ -1.69
USP53-205ENST00000509769 FAM43AQ8N2R8 423 aa4.48□□□□□ -1.69
USP53-205ENST00000509769 CFAP74Q9C0B2 1584 aa4.48□□□□□ -1.69
USP53-205ENST00000509769 PREX1Q8TCU6 1659 aa4.48□□□□□ -1.69
USP53-205ENST00000509769 NEO1Q92859 1461 aa4.48□□□□□ -1.69
USP53-205ENST00000509769 EFCAB5A4FU69 1503 aa4.48□□□□□ -1.69
USP53-205ENST00000509769 CC2D1BQ5T0F9 858 aaKnown RBP4.48□□□□□ -1.69
USP53-205ENST00000509769 GOLGA6L10A6NI86 522 aa4.47□□□□□ -1.69
USP53-205ENST00000509769 GBP2P32456 591 aaPredicted RBP4.47□□□□□ -1.69
USP53-205ENST00000509769 HIRIP3Q9BW71 556 aaPredicted RBP4.47□□□□□ -1.69
USP53-205ENST00000509769 BCORL1Q5H9F3 1711 aa4.47□□□□□ -1.69
USP53-205ENST00000509769 FYB1O15117 783 aa4.47□□□□□ -1.69
USP53-205ENST00000509769 HNRNPUQ00839 825 aaKnown RBP eCLIP4.47□□□□□ -1.69
USP53-205ENST00000509769 MNS1Q8NEH6 495 aa4.47□□□□□ -1.69
USP53-205ENST00000509769 CLSTN1O94985 981 aa4.47□□□□□ -1.69
USP53-205ENST00000509769 RNF20Q5VTR2 975 aa4.47□□□□□ -1.69
USP53-205ENST00000509769 CPS1P31327 1500 aa4.46□□□□□ -1.69
USP53-205ENST00000509769 ZBTB7CA1YPR0 619 aa4.46□□□□□ -1.69
USP53-205ENST00000509769 MCCP23508 829 aa4.46□□□□□ -1.69
USP53-205ENST00000509769 ZRANB1Q9UGI0 708 aa4.46□□□□□ -1.69
USP53-205ENST00000509769 KIF21BO75037 1637 aa4.46□□□□□ -1.7
USP53-205ENST00000509769 MAGI2Q86UL8 1455 aa4.46□□□□□ -1.7
USP53-205ENST00000509769 BRD2P25440 801 aaKnown RBP4.46□□□□□ -1.7
USP53-205ENST00000509769 AK7Q96M32 723 aa4.46□□□□□ -1.7
USP53-205ENST00000509769 GOLGA6L7A0A1B0GV03 622 aa4.46□□□□□ -1.7
USP53-205ENST00000509769 IFFO2Q5TF58 517 aa4.46□□□□□ -1.7
USP53-205ENST00000509769 HMGB3O15347 200 aaKnown RBP4.46□□□□□ -1.7
USP53-205ENST00000509769 PDIA4P13667 645 aaKnown RBP4.46□□□□□ -1.7
USP53-205ENST00000509769 IPO9Q96P70 1041 aaKnown RBP4.46□□□□□ -1.7
USP53-205ENST00000509769 CNTLNQ9NXG0 1405 aa4.45□□□□□ -1.7
USP53-205ENST00000509769 CCDC88BA6NC98 1476 aa4.45□□□□□ -1.7
USP53-205ENST00000509769 TMCO5BA8MYB1 307 aa4.45□□□□□ -1.7
USP53-205ENST00000509769 CCP110O43303 1012 aa4.45□□□□□ -1.7
USP53-205ENST00000509769 RIMS1Q86UR5 1692 aaKnown RBP4.45□□□□□ -1.7
USP53-205ENST00000509769 CCER2I3L3R5 266 aa4.45□□□□□ -1.7
USP53-205ENST00000509769 HSP90AB1P08238 724 aaKnown RBP4.45□□□□□ -1.7
USP53-205ENST00000509769 PSMD1Q99460 953 aa4.45□□□□□ -1.7
USP53-205ENST00000509769 CALCOCO1Q9P1Z2 691 aa4.45□□□□□ -1.7
USP53-205ENST00000509769 KIAA0556O60303 1618 aa4.45□□□□□ -1.7
USP53-205ENST00000509769 GSE1Q14687 1217 aa4.45□□□□□ -1.7
USP53-205ENST00000509769 SH3BGRP55822 239 aaPredicted RBP4.44□□□□□ -1.7
USP53-205ENST00000509769 ZNF526Q8TF50 670 aaPredicted RBP4.44□□□□□ -1.7
USP53-205ENST00000509769 EEA1Q15075 1411 aa4.44□□□□□ -1.7
USP53-205ENST00000509769 BCCIPQ9P287 314 aaKnown RBP eCLIP4.44□□□□□ -1.7
USP53-205ENST00000509769 PATL2C9JE40 543 aaKnown RBP4.44□□□□□ -1.7
USP53-205ENST00000509769 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.44□□□□□ -1.7
USP53-205ENST00000509769 CHIC1Q5VXU3 224 aa4.44□□□□□ -1.7
USP53-205ENST00000509769 CSRNP3Q8WYN3 585 aa4.44□□□□□ -1.7
USP53-205ENST00000509769 DNAJC2Q99543 621 aaKnown RBP4.44□□□□□ -1.7
USP53-205ENST00000509769 TIMELESSQ9UNS1 1208 aa4.44□□□□□ -1.7
USP53-205ENST00000509769 MADDQ8WXG6 1647 aa4.44□□□□□ -1.7
USP53-205ENST00000509769 DRC7Q8IY82 874 aa4.44□□□□□ -1.7
USP53-205ENST00000509769 RBM19Q9Y4C8 960 aaKnown RBP4.44□□□□□ -1.7
USP53-205ENST00000509769 GOLGA3Q08378 1498 aa4.44□□□□□ -1.7
USP53-205ENST00000509769 ZNF772Q68DY9 489 aaPredicted RBP4.43□□□□□ -1.7
USP53-205ENST00000509769 RUSC2Q8N2Y8 1516 aa4.43□□□□□ -1.7
USP53-205ENST00000509769 PPRC1Q5VV67 1664 aaKnown RBP4.43□□□□□ -1.7
USP53-205ENST00000509769 GOLGA6L19H0YKK7 550 aa4.43□□□□□ -1.7
USP53-205ENST00000509769 HNRNPUL2Q1KMD3 747 aaKnown RBP4.43□□□□□ -1.7
USP53-205ENST00000509769 LEKR1Q6ZMV7 388 aa4.43□□□□□ -1.7
USP53-205ENST00000509769 KDM5BQ9UGL1 1544 aa4.43□□□□□ -1.7
USP53-205ENST00000509769 TONSLQ96HA7 1378 aa4.43□□□□□ -1.7
USP53-205ENST00000509769 IRX3P78415 501 aaPredicted RBP4.43□□□□□ -1.7
USP53-205ENST00000509769 HSP90B2PQ58FF3 399 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms