RNA–Protein interactions for RNA: ENST00000478644.1

HOXB3-209, Transcript of homeobox B3, humanhuman

TSL 4

Gene HOXB3, Length 398 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-209ENST00000478644 UPF1Q92900 1129 aaKnown RBP eCLIP11.41□□□□□ -0.58
HOXB3-209ENST00000478644 CCDC88BA6NC98 1476 aa11.4□□□□□ -0.58
HOXB3-209ENST00000478644 POTEEQ6S8J3 1075 aa11.4□□□□□ -0.58
HOXB3-209ENST00000478644 EMILIN3Q9NT22 766 aa11.4□□□□□ -0.58
HOXB3-209ENST00000478644 CFAP44Q96MT7 982 aa11.39□□□□□ -0.59
HOXB3-209ENST00000478644 URB2Q14146 1524 aaKnown RBP11.36□□□□□ -0.59
HOXB3-209ENST00000478644 IFT140Q96RY7 1462 aa11.36□□□□□ -0.59
HOXB3-209ENST00000478644 EVI5O60447 810 aa11.35□□□□□ -0.59
HOXB3-209ENST00000478644 LSM11P83369 360 aaKnown RBP eCLIP11.35□□□□□ -0.59
HOXB3-209ENST00000478644 PPP4R3BQ5MIZ7 849 aa11.35□□□□□ -0.59
HOXB3-209ENST00000478644 ARHGAP33O14559 1287 aa11.34□□□□□ -0.59
HOXB3-209ENST00000478644 MAP3K9P80192 1104 aa11.34□□□□□ -0.59
HOXB3-209ENST00000478644 FOSBP53539 338 aa11.32□□□□□ -0.6
HOXB3-209ENST00000478644 PTGER2P43116 358 aa11.31□□□□□ -0.6
HOXB3-209ENST00000478644 AXIN2Q9Y2T1 843 aa11.3□□□□□ -0.6
HOXB3-209ENST00000478644 JPH4Q96JJ6 628 aa11.29□□□□□ -0.6
HOXB3-209ENST00000478644 TOPBP1Q92547 1522 aa11.29□□□□□ -0.6
HOXB3-209ENST00000478644 ANKRD13DQ6ZTN6 518 aa11.28□□□□□ -0.6
HOXB3-209ENST00000478644 DNMBPQ6XZF7 1577 aa11.28□□□□□ -0.6
HOXB3-209ENST00000478644 ZNF454Q8N9F8 522 aa11.27□□□□□ -0.61
HOXB3-209ENST00000478644 BCL2L12Q9HB09 334 aa11.27□□□□□ -0.61
HOXB3-209ENST00000478644 ARIH1Q9Y4X5 557 aaPredicted RBP11.27□□□□□ -0.61
HOXB3-209ENST00000478644 TK2O00142 265 aa11.26□□□□□ -0.61
HOXB3-209ENST00000478644 PSEN2P49810 448 aa11.24□□□□□ -0.61
HOXB3-209ENST00000478644 MYT1LQ9UL68 1186 aa11.24□□□□□ -0.61
HOXB3-209ENST00000478644 DPYSL4O14531 572 aa11.23□□□□□ -0.61
HOXB3-209ENST00000478644 E2F4Q16254 413 aa11.23□□□□□ -0.61
HOXB3-209ENST00000478644 ZDHHC16Q969W1 377 aa11.23□□□□□ -0.61
HOXB3-209ENST00000478644 WDR97A6NE52 1622 aa11.23□□□□□ -0.61
HOXB3-209ENST00000478644 DMRTA1Q5VZB9 504 aa11.22□□□□□ -0.61
HOXB3-209ENST00000478644 ADGRD1Q6QNK2 874 aa11.22□□□□□ -0.61
HOXB3-209ENST00000478644 WDR70Q9NW82 654 aa11.22□□□□□ -0.61
HOXB3-209ENST00000478644 PHF14O94880 888 aa11.21□□□□□ -0.61
HOXB3-209ENST00000478644 SLC4A5Q9BY07 1137 aa11.21□□□□□ -0.61
HOXB3-209ENST00000478644 TSHZ2Q9NRE2 1034 aa11.21□□□□□ -0.61
HOXB3-209ENST00000478644 PCDHGA10Q9Y5H3 936 aa11.21□□□□□ -0.61
HOXB3-209ENST00000478644 HRO43593 1189 aa11.2□□□□□ -0.62
HOXB3-209ENST00000478644 RNF166Q96A37 237 aaPredicted RBP11.2□□□□□ -0.62
HOXB3-209ENST00000478644 SPDYE16A6NNV3 312 aaPredicted RBP11.19□□□□□ -0.62
HOXB3-209ENST00000478644 PDIA6Q15084 440 aa11.19□□□□□ -0.62
HOXB3-209ENST00000478644 KCNH8Q96L42 1107 aa11.19□□□□□ -0.62
HOXB3-209ENST00000478644 ZNF608Q9ULD9 1512 aaPredicted RBP11.19□□□□□ -0.62
HOXB3-209ENST00000478644 PTPREP23469 700 aa11.18□□□□□ -0.62
HOXB3-209ENST00000478644 FBXW7Q969H0 707 aa11.18□□□□□ -0.62
HOXB3-209ENST00000478644 KCNK17Q96T54 332 aa11.18□□□□□ -0.62
HOXB3-209ENST00000478644 ADAM33Q9BZ11 813 aa11.18□□□□□ -0.62
HOXB3-209ENST00000478644 SOGA1O94964 1423 aa11.18□□□□□ -0.62
HOXB3-209ENST00000478644 EPAS1Q99814 870 aa11.17□□□□□ -0.62
HOXB3-209ENST00000478644 POLA1P09884 1462 aaPredicted RBP11.17□□□□□ -0.62
HOXB3-209ENST00000478644 TARBP1Q13395 1621 aaKnown RBP11.17□□□□□ -0.62
HOXB3-209ENST00000478644 EIF4G3O43432 1585 aaKnown RBP11.16□□□□□ -0.62
HOXB3-209ENST00000478644 TYW1BQ6NUM6 668 aa11.16□□□□□ -0.62
HOXB3-209ENST00000478644 ZBED2Q9BTP6 218 aa11.14□□□□□ -0.63
HOXB3-209ENST00000478644 VPS9D1Q9Y2B5 631 aa11.14□□□□□ -0.63
HOXB3-209ENST00000478644 AQRO60306 1485 aaKnown RBP eCLIP11.13□□□□□ -0.63
HOXB3-209ENST00000478644 PLCB2Q00722 1185 aa11.13□□□□□ -0.63
HOXB3-209ENST00000478644 PPP1R3GB7ZBB8 358 aa11.1□□□□□ -0.63
HOXB3-209ENST00000478644 BHMG1C9JSJ3 638 aaPredicted RBP11.1□□□□□ -0.63
HOXB3-209ENST00000478644 CHMP7Q8WUX9 453 aaPredicted RBP11.1□□□□□ -0.63
HOXB3-209ENST00000478644 MAGI1Q96QZ7 1491 aaPredicted RBP11.1□□□□□ -0.63
HOXB3-209ENST00000478644 GRIN2BQ13224 1484 aa11.09□□□□□ -0.63
HOXB3-209ENST00000478644 FGD5Q6ZNL6 1462 aa11.09□□□□□ -0.63
HOXB3-209ENST00000478644 RIMBP3CA6NJZ7 1639 aa11.09□□□□□ -0.63
HOXB3-209ENST00000478644 RIMBP3BA6NNM3 1639 aa11.09□□□□□ -0.63
HOXB3-209ENST00000478644 RIMBP3Q9UFD9 1639 aa11.09□□□□□ -0.63
HOXB3-209ENST00000478644 ARHGEF11O15085 1522 aa11.09□□□□□ -0.63
HOXB3-209ENST00000478644 RAD54L2Q9Y4B4 1467 aa11.07□□□□□ -0.64
HOXB3-209ENST00000478644 TDRD9Q8NDG6 1382 aaKnown RBP11.07□□□□□ -0.64
HOXB3-209ENST00000478644 SUPT5HO00267 1087 aaKnown RBP11.07□□□□□ -0.64
HOXB3-209ENST00000478644 C6orf132Q5T0Z8 1188 aa11.07□□□□□ -0.64
HOXB3-209ENST00000478644 DDX12PQ92771 950 aa11.07□□□□□ -0.64
HOXB3-209ENST00000478644 CUX1P39880 1505 aa11.06□□□□□ -0.64
HOXB3-209ENST00000478644 ARHGEF1Q92888 912 aaKnown RBP11.06□□□□□ -0.64
HOXB3-209ENST00000478644 SYNJ1O43426 1573 aa11.05□□□□□ -0.64
HOXB3-209ENST00000478644 COL9A1P20849 921 aa11.05□□□□□ -0.64
HOXB3-209ENST00000478644 WRNQ14191 1432 aaPredicted RBP eCLIP11.04□□□□□ -0.64
HOXB3-209ENST00000478644 ONECUT3O60422 494 aaPredicted RBP11.04□□□□□ -0.64
HOXB3-209ENST00000478644 EN1Q05925 392 aaPredicted RBP11.04□□□□□ -0.64
HOXB3-209ENST00000478644 SYNJ2O15056 1496 aa11.04□□□□□ -0.64
HOXB3-209ENST00000478644 ABCA10Q8WWZ4 1543 aa11.04□□□□□ -0.64
HOXB3-209ENST00000478644 CHD1O14646 1710 aa11.04□□□□□ -0.64
HOXB3-209ENST00000478644 CYB5RLQ6IPT4 315 aa11.03□□□□□ -0.64
HOXB3-209ENST00000478644 GAPVD1Q14C86 1478 aa11.03□□□□□ -0.64
HOXB3-209ENST00000478644 SNAPC4Q5SXM2 1469 aa11.02□□□□□ -0.65
HOXB3-209ENST00000478644 NBR1Q14596 966 aa11.01□□□□□ -0.65
HOXB3-209ENST00000478644 KCNV2Q8TDN2 545 aa11.01□□□□□ -0.65
HOXB3-209ENST00000478644 STAC3Q96MF2 364 aa11.01□□□□□ -0.65
HOXB3-209ENST00000478644 RABGEF1Q9UJ41 708 aa11.01□□□□□ -0.65
HOXB3-209ENST00000478644 OSBPP22059 807 aa10.99□□□□□ -0.65
HOXB3-209ENST00000478644 RBM33Q96EV2 1170 aaKnown RBP10.99□□□□□ -0.65
HOXB3-209ENST00000478644 HCSTQ9UBK5 93 aa10.99□□□□□ -0.65
HOXB3-209ENST00000478644 PROX2Q3B8N5 592 aa10.98□□□□□ -0.65
HOXB3-209ENST00000478644 NBPF3Q9H094 633 aa10.98□□□□□ -0.65
HOXB3-209ENST00000478644 PRIM1P49642 420 aaKnown RBP10.97□□□□□ -0.65
HOXB3-209ENST00000478644 CLASP1Q7Z460 1538 aa10.97□□□□□ -0.65
HOXB3-209ENST00000478644 TOP2BQ02880 1626 aa10.96□□□□□ -0.65
HOXB3-209ENST00000478644 GRXCR2A6NFK2 248 aa10.96□□□□□ -0.65
HOXB3-209ENST00000478644 P3H3Q8IVL6 736 aa10.96□□□□□ -0.65
HOXB3-209ENST00000478644 MRPL50Q8N5N7 158 aaKnown RBP10.96□□□□□ -0.65
HOXB3-209ENST00000478644 ABCA5Q8WWZ7 1642 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms