RNA–Protein interactions for RNA: ENST00000478644.1

HOXB3-209, Transcript of homeobox B3, humanhuman

TSL 4

Gene HOXB3, Length 398 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXB3-209ENST00000478644 AEBP2Q6ZN18 517 aaPredicted RBP26.4■■□□□ 1.82
HOXB3-209ENST00000478644 CHIC1Q5VXU3 224 aa25.43■■□□□ 1.66
HOXB3-209ENST00000478644 SENP3Q9H4L4 574 aaPredicted RBP22.47■■□□□ 1.19
HOXB3-209ENST00000478644 PHF23Q9BUL5 403 aaPredicted RBP22.31■■□□□ 1.16
HOXB3-209ENST00000478644 FOXD1Q16676 465 aa20.89■□□□□ 0.93
HOXB3-209ENST00000478644 PLPPR3Q6T4P5 718 aa20.47■□□□□ 0.87
HOXB3-209ENST00000478644 PPP6R1Q9UPN7 881 aa19.8■□□□□ 0.76
HOXB3-209ENST00000478644 ADRA2BP18089 450 aa19.71■□□□□ 0.75
HOXB3-209ENST00000478644 PIAS4Q8N2W9 510 aaPredicted RBP19.55■□□□□ 0.72
HOXB3-209ENST00000478644 MSH5O43196 834 aa19.44■□□□□ 0.7
HOXB3-209ENST00000478644 POTEDQ86YR6 584 aa18.36■□□□□ 0.53
HOXB3-209ENST00000478644 SCAF1Q9H7N4 1312 aaKnown RBP18.1■□□□□ 0.49
HOXB3-209ENST00000478644 MAPK8IP2Q13387 824 aaPredicted RBP18■□□□□ 0.47
HOXB3-209ENST00000478644 PPP4R3CPQ6ZMV5 832 aa17.96■□□□□ 0.47
HOXB3-209ENST00000478644 DMRT2Q9Y5R5 561 aa17.89■□□□□ 0.45
HOXB3-209ENST00000478644 CNKSR2Q8WXI2 1034 aa17.58■□□□□ 0.4
HOXB3-209ENST00000478644 HOXD11P31277 338 aaPredicted RBP17.41■□□□□ 0.38
HOXB3-209ENST00000478644 NCBP3Q53F19 620 aaKnown RBP17.39■□□□□ 0.37
HOXB3-209ENST00000478644 RNF216Q9NWF9 866 aaPredicted RBP17.35■□□□□ 0.37
HOXB3-209ENST00000478644 NPM3O75607 178 aaKnown RBP17.12■□□□□ 0.33
HOXB3-209ENST00000478644 KCNA4P22459 653 aa17.07■□□□□ 0.32
HOXB3-209ENST00000478644 DCAF8L1A6NGE4 600 aa16.97■□□□□ 0.31
HOXB3-209ENST00000478644 DNAJC5BQ9UF47 199 aa16.88■□□□□ 0.29
HOXB3-209ENST00000478644 RNF39Q9H2S5 420 aa16.63■□□□□ 0.25
HOXB3-209ENST00000478644 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.46■□□□□ 0.23
HOXB3-209ENST00000478644 C1QBPQ07021 282 aaKnown RBP16.42■□□□□ 0.22
HOXB3-209ENST00000478644 CACNB1Q02641 598 aaPredicted RBP16.4■□□□□ 0.22
HOXB3-209ENST00000478644 SLC4A2P04920 1241 aa16.28■□□□□ 0.2
HOXB3-209ENST00000478644 U3KPZ7 1027 aaPredicted RBP16.2■□□□□ 0.18
HOXB3-209ENST00000478644 SLC4A1APQ9BWU0 796 aaKnown RBP16.18■□□□□ 0.18
HOXB3-209ENST00000478644 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.9■□□□□ 0.14
HOXB3-209ENST00000478644 HNRNPUL2Q1KMD3 747 aaKnown RBP15.9■□□□□ 0.14
HOXB3-209ENST00000478644 FOXD4L1Q9NU39 408 aa15.85■□□□□ 0.13
HOXB3-209ENST00000478644 MYCNP04198 464 aaPredicted RBP15.84■□□□□ 0.13
HOXB3-209ENST00000478644 SPINK5Q9NQ38 1064 aaPredicted RBP15.83■□□□□ 0.12
HOXB3-209ENST00000478644 APLP2Q06481 763 aa15.81■□□□□ 0.12
HOXB3-209ENST00000478644 SAMD1Q6SPF0 538 aaPredicted RBP15.81■□□□□ 0.12
HOXB3-209ENST00000478644 CAPN15O75808 1086 aa15.75■□□□□ 0.11
HOXB3-209ENST00000478644 ZBTB22O15209 634 aa15.71■□□□□ 0.11
HOXB3-209ENST00000478644 DSG3P32926 999 aa15.67■□□□□ 0.1
HOXB3-209ENST00000478644 ZNF219Q9P2Y4 722 aaPredicted RBP15.65■□□□□ 0.1
HOXB3-209ENST00000478644 TRHP20396 242 aaPredicted RBP15.57■□□□□ 0.08
HOXB3-209ENST00000478644 ATXN8OSP0DMR3 200 aa15.41■□□□□ 0.06
HOXB3-209ENST00000478644 ATF5Q9Y2D1 282 aaPredicted RBP15.41■□□□□ 0.06
HOXB3-209ENST00000478644 ABCB7O75027 752 aa15.39■□□□□ 0.05
HOXB3-209ENST00000478644 NISCHQ9Y2I1 1504 aa15.38■□□□□ 0.05
HOXB3-209ENST00000478644 CSRNP3Q8WYN3 585 aa15.32■□□□□ 0.04
HOXB3-209ENST00000478644 POLA2Q14181 598 aa15.29■□□□□ 0.04
HOXB3-209ENST00000478644 EHMT2Q96KQ7 1210 aa15.17■□□□□ 0.02
HOXB3-209ENST00000478644 ZBTB12Q9Y330 459 aaPredicted RBP15.06■□□□□ 0
HOXB3-209ENST00000478644 RBM42Q9BTD8 480 aaKnown RBP14.95□□□□□ -0.02
HOXB3-209ENST00000478644 FBLN2P98095 1184 aa14.78□□□□□ -0.04
HOXB3-209ENST00000478644 MKRN4PQ13434 485 aaPredicted RBP14.75□□□□□ -0.05
HOXB3-209ENST00000478644 OSCARQ8IYS5 282 aa14.75□□□□□ -0.05
HOXB3-209ENST00000478644 AKT1S1Q96B36 256 aa14.69□□□□□ -0.06
HOXB3-209ENST00000478644 SPDYE2BA6NHP3 402 aa14.62□□□□□ -0.07
HOXB3-209ENST00000478644 SPDYE6P0CI01 402 aa14.62□□□□□ -0.07
HOXB3-209ENST00000478644 SPDYE2Q495Y8 402 aa14.62□□□□□ -0.07
HOXB3-209ENST00000478644 REM2Q8IYK8 340 aaPredicted RBP14.52□□□□□ -0.09
HOXB3-209ENST00000478644 SSUH2Q9Y2M2 353 aa14.49□□□□□ -0.09
HOXB3-209ENST00000478644 POTEHQ6S545 545 aa14.45□□□□□ -0.1
HOXB3-209ENST00000478644 CHRDL2Q6WN34 429 aa14.45□□□□□ -0.1
HOXB3-209ENST00000478644 ZNF692Q9BU19 519 aaPredicted RBP14.45□□□□□ -0.1
HOXB3-209ENST00000478644 PITPNM1O00562 1244 aa14.34□□□□□ -0.11
HOXB3-209ENST00000478644 SPDYE1Q8NFV5 336 aaPredicted RBP14.26□□□□□ -0.13
HOXB3-209ENST00000478644 PABPN1Q86U42 306 aaKnown RBP eCLIP14.24□□□□□ -0.13
HOXB3-209ENST00000478644 FXR2P51116 673 aaKnown RBP eCLIP14.21□□□□□ -0.13
HOXB3-209ENST00000478644 SPDYE4A6NLX3 237 aa14.2□□□□□ -0.14
HOXB3-209ENST00000478644 PIP4P2Q8N4L2 257 aa14.19□□□□□ -0.14
HOXB3-209ENST00000478644 CLEC11AQ9Y240 323 aa14.13□□□□□ -0.15
HOXB3-209ENST00000478644 PROM2Q8N271 834 aa14.03□□□□□ -0.16
HOXB3-209ENST00000478644 PRR29P0C7W0 189 aa14□□□□□ -0.17
HOXB3-209ENST00000478644 STAG3Q9UJ98 1225 aa13.99□□□□□ -0.17
HOXB3-209ENST00000478644 PRKAR2AP13861 404 aaKnown RBP13.96□□□□□ -0.17
HOXB3-209ENST00000478644 CHADLQ6NUI6 762 aa13.84□□□□□ -0.19
HOXB3-209ENST00000478644 CCDC180Q9P1Z9 1646 aa13.82□□□□□ -0.2
HOXB3-209ENST00000478644 FKBP8Q14318 412 aa13.8□□□□□ -0.2
HOXB3-209ENST00000478644 HAX1O00165 279 aa13.79□□□□□ -0.2
HOXB3-209ENST00000478644 CREBZFQ9NS37 354 aa13.77□□□□□ -0.21
HOXB3-209ENST00000478644 C19orf67A6NJJ6 358 aa13.74□□□□□ -0.21
HOXB3-209ENST00000478644 FARP1Q9Y4F1 1045 aaPredicted RBP13.74□□□□□ -0.21
HOXB3-209ENST00000478644 SP7Q8TDD2 431 aaPredicted RBP13.71□□□□□ -0.21
HOXB3-209ENST00000478644 EVX2Q03828 476 aa13.69□□□□□ -0.22
HOXB3-209ENST00000478644 ABCC9O60706 1549 aa13.64□□□□□ -0.23
HOXB3-209ENST00000478644 MNX1P50219 401 aaPredicted RBP13.62□□□□□ -0.23
HOXB3-209ENST00000478644 NPM1P06748 294 aaKnown RBP eCLIP13.53□□□□□ -0.24
HOXB3-209ENST00000478644 CD44P16070 742 aaKnown RBP13.53□□□□□ -0.24
HOXB3-209ENST00000478644 FBXO3Q9UK99 471 aa13.49□□□□□ -0.25
HOXB3-209ENST00000478644 MIER1Q8N108 512 aa13.48□□□□□ -0.25
HOXB3-209ENST00000478644 PLEKHG5O94827 1062 aa13.44□□□□□ -0.26
HOXB3-209ENST00000478644 CLCN6P51797 869 aa13.43□□□□□ -0.26
HOXB3-209ENST00000478644 GABBR2O75899 941 aa13.41□□□□□ -0.26
HOXB3-209ENST00000478644 PLCD3Q8N3E9 789 aa13.4□□□□□ -0.26
HOXB3-209ENST00000478644 ZNF579Q8NAF0 562 aaKnown RBP13.4□□□□□ -0.26
HOXB3-209ENST00000478644 ZRANB1Q9UGI0 708 aa13.38□□□□□ -0.27
HOXB3-209ENST00000478644 PAK3O75914 559 aaPredicted RBP13.35□□□□□ -0.27
HOXB3-209ENST00000478644 ZBTB47Q9UFB7 747 aaPredicted RBP13.35□□□□□ -0.27
HOXB3-209ENST00000478644 VASPP50552 380 aaPredicted RBP13.28□□□□□ -0.28
HOXB3-209ENST00000478644 NUBP1P53384 320 aa13.25□□□□□ -0.29
HOXB3-209ENST00000478644 RASEFQ8IZ41 740 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms