RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 PTMSP20962 102 aa12.73□□□□□ -0.37
CLIP1-202ENST00000358808 ITPRIPQ8IWB1 547 aa12.73□□□□□ -0.37
CLIP1-202ENST00000358808 STK31Q9BXU1 1019 aa12.72□□□□□ -0.37
CLIP1-202ENST00000358808 TRIM34Q9BYJ4 488 aa12.72□□□□□ -0.37
CLIP1-202ENST00000358808 GRIN2BQ13224 1484 aa12.72□□□□□ -0.37
CLIP1-202ENST00000358808 TPD52L1Q16890 204 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-202ENST00000358808 DEKP35659 375 aaKnown RBP12.71□□□□□ -0.37
CLIP1-202ENST00000358808 AQRO60306 1485 aaKnown RBP eCLIP12.71□□□□□ -0.377e-7■■■■■ 48.1
CLIP1-202ENST00000358808 CALD1Q05682 793 aaKnown RBP12.71□□□□□ -0.37
CLIP1-202ENST00000358808 SPAG9O60271 1321 aaKnown RBP12.71□□□□□ -0.38
CLIP1-202ENST00000358808 GZF1Q9H116 711 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-202ENST00000358808 SIN3AQ96ST3 1273 aa12.7□□□□□ -0.38
CLIP1-202ENST00000358808 NOL8Q76FK4 1167 aaKnown RBP12.7□□□□□ -0.38
CLIP1-202ENST00000358808 PTPRGP23470 1445 aa12.7□□□□□ -0.38
CLIP1-202ENST00000358808 EID1Q9Y6B2 187 aa12.7□□□□□ -0.38
CLIP1-202ENST00000358808 SETQ01105 290 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-202ENST00000358808 CSPP1Q1MSJ5 1256 aa12.69□□□□□ -0.38
CLIP1-202ENST00000358808 RBM19Q9Y4C8 960 aaKnown RBP12.68□□□□□ -0.38
CLIP1-202ENST00000358808 EFCAB2Q5VUJ9 269 aa12.68□□□□□ -0.38
CLIP1-202ENST00000358808 CHMP4AQ9BY43 222 aa12.68□□□□□ -0.38
CLIP1-202ENST00000358808 SF3A1Q15459 793 aaKnown RBP12.68□□□□□ -0.38
CLIP1-202ENST00000358808 TPM2P07951 284 aa12.68□□□□□ -0.38
CLIP1-202ENST00000358808 TSR1Q2NL82 804 aaKnown RBP12.67□□□□□ -0.38
CLIP1-202ENST00000358808 KLHL34Q8N239 644 aa12.67□□□□□ -0.38
CLIP1-202ENST00000358808 HDAC5Q9UQL6 1122 aa12.67□□□□□ -0.38
CLIP1-202ENST00000358808 AEBP2Q6ZN18 517 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-202ENST00000358808 SLC4A10Q6U841 1118 aa12.66□□□□□ -0.38
CLIP1-202ENST00000358808 U2AF1L5P0DN76 240 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-202ENST00000358808 U2AF1Q01081 240 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLIP1-202ENST00000358808 DNMBPQ6XZF7 1577 aa12.66□□□□□ -0.38
CLIP1-202ENST00000358808 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.66□□□□□ -0.381e-9■■■■■ 73.1
CLIP1-202ENST00000358808 TOPBP1Q92547 1522 aa12.65□□□□□ -0.38
CLIP1-202ENST00000358808 AKAP17AQ02040 695 aaKnown RBP12.65□□□□□ -0.38
CLIP1-202ENST00000358808 NOL10Q9BSC4 688 aaKnown RBP12.65□□□□□ -0.38
CLIP1-202ENST00000358808 FBXW7Q969H0 707 aa12.65□□□□□ -0.38
CLIP1-202ENST00000358808 ARHGAP35Q9NRY4 1499 aa12.65□□□□□ -0.38
CLIP1-202ENST00000358808 RWDD1Q9H446 243 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-202ENST00000358808 AMOTL1Q8IY63 956 aa12.64□□□□□ -0.39
CLIP1-202ENST00000358808 DCAF8L1A6NGE4 600 aa12.63□□□□□ -0.39
CLIP1-202ENST00000358808 HMMRO75330 724 aa12.63□□□□□ -0.39
CLIP1-202ENST00000358808 PKD2Q13563 968 aa12.63□□□□□ -0.39
CLIP1-202ENST00000358808 MEX3CQ5U5Q3 659 aaKnown RBP12.63□□□□□ -0.39
CLIP1-202ENST00000358808 CCAR2Q8N163 923 aaKnown RBP12.63□□□□□ -0.39
CLIP1-202ENST00000358808 MFAP1P55081 439 aaKnown RBP12.63□□□□□ -0.39
CLIP1-202ENST00000358808 LTV1Q96GA3 475 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-202ENST00000358808 KIF16BQ96L93 1317 aa12.63□□□□□ -0.39
CLIP1-202ENST00000358808 FHOD3Q2V2M9 1422 aa12.63□□□□□ -0.39
CLIP1-202ENST00000358808 SLKQ9H2G2 1235 aaPredicted RBP12.63□□□□□ -0.39
CLIP1-202ENST00000358808 KIF3AQ9Y496 699 aa12.62□□□□□ -0.39
CLIP1-202ENST00000358808 CCDC18Q5T9S5 1454 aa12.62□□□□□ -0.39
CLIP1-202ENST00000358808 PCMTD1Q96MG8 357 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-202ENST00000358808 FOXD4L1Q9NU39 408 aa12.62□□□□□ -0.39
CLIP1-202ENST00000358808 H3BQV1 296 aa12.61□□□□□ -0.39
CLIP1-202ENST00000358808 KIF3BO15066 747 aa12.61□□□□□ -0.39
CLIP1-202ENST00000358808 IFFO2Q5TF58 517 aa12.61□□□□□ -0.39
CLIP1-202ENST00000358808 CCDC70Q6NSX1 233 aa12.61□□□□□ -0.39
CLIP1-202ENST00000358808 NGDNQ8NEJ9 315 aaKnown RBP12.61□□□□□ -0.39
CLIP1-202ENST00000358808 TPM1P09493 284 aa12.6□□□□□ -0.39
CLIP1-202ENST00000358808 PHF23Q9BUL5 403 aaPredicted RBP12.6□□□□□ -0.39
CLIP1-202ENST00000358808 DHX16O60231 1041 aaKnown RBP12.6□□□□□ -0.39
CLIP1-202ENST00000358808 CALRP27797 417 aaKnown RBP12.6□□□□□ -0.39
CLIP1-202ENST00000358808 CCDC43Q96MW1 224 aaKnown RBP12.6□□□□□ -0.39
CLIP1-202ENST00000358808 AMPHP49418 695 aa12.6□□□□□ -0.39
CLIP1-202ENST00000358808 WASHC2CQ9Y4E1 1318 aa12.59□□□□□ -0.39
CLIP1-202ENST00000358808 EVA1CP58658 441 aa12.59□□□□□ -0.39
CLIP1-202ENST00000358808 FOXD4L5Q5VV16 416 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-202ENST00000358808 FOXD4L4Q8WXT5 416 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-202ENST00000358808 VPS8Q8N3P4 1428 aa12.59□□□□□ -0.39
CLIP1-202ENST00000358808 RRP12Q5JTH9 1297 aaKnown RBP12.59□□□□□ -0.39
CLIP1-202ENST00000358808 SYNE3Q6ZMZ3 975 aa12.59□□□□□ -0.39
CLIP1-202ENST00000358808 SAMD1Q6SPF0 538 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-202ENST00000358808 NUTM2DQ5VT03 806 aaPredicted RBP12.58□□□□□ -0.4
CLIP1-202ENST00000358808 SNAPC4Q5SXM2 1469 aa12.58□□□□□ -0.4
CLIP1-202ENST00000358808 SMC4Q9NTJ3 1288 aa12.58□□□□□ -0.4
CLIP1-202ENST00000358808 ROCK2O75116 1388 aaKnown RBP12.58□□□□□ -0.4
CLIP1-202ENST00000358808 FAM184AQ8NB25 1140 aa12.57□□□□□ -0.4
CLIP1-202ENST00000358808 ANKRD30AQ9BXX3 1397 aa12.57□□□□□ -0.4
CLIP1-202ENST00000358808 PHF14O94880 888 aa12.57□□□□□ -0.4
CLIP1-202ENST00000358808 IGF1RP08069 1367 aa12.57□□□□□ -0.4
CLIP1-202ENST00000358808 EIF3AQ14152 1382 aaKnown RBP12.57□□□□□ -0.4
CLIP1-202ENST00000358808 KTN1Q86UP2 1357 aaKnown RBP12.57□□□□□ -0.4
CLIP1-202ENST00000358808 NUP155O75694 1391 aa12.56□□□□□ -0.4
CLIP1-202ENST00000358808 PEG3Q9GZU2 1588 aa12.56□□□□□ -0.4
CLIP1-202ENST00000358808 TCERG1O14776 1098 aaKnown RBP12.56□□□□□ -0.4
CLIP1-202ENST00000358808 GOLGA6L3A6NEY3 463 aa12.56□□□□□ -0.4
CLIP1-202ENST00000358808 FOXD1Q16676 465 aa12.56□□□□□ -0.4
CLIP1-202ENST00000358808 CCDC47Q96A33 483 aaKnown RBP12.56□□□□□ -0.4
CLIP1-202ENST00000358808 POLA1P09884 1462 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-202ENST00000358808 HNRNPMP52272 730 aaKnown RBP eCLIP12.56□□□□□ -0.4
CLIP1-202ENST00000358808 PMFBP1Q8TBY8 1022 aa12.55□□□□□ -0.4
CLIP1-202ENST00000358808 FAM69CQ0P6D2 419 aa12.55□□□□□ -0.4
CLIP1-202ENST00000358808 PRDM2Q13029 1718 aa12.54□□□□□ -0.4
CLIP1-202ENST00000358808 GOLGA6L19H0YKK7 550 aa12.54□□□□□ -0.4
CLIP1-202ENST00000358808 ODF2Q5BJF6 829 aa12.54□□□□□ -0.4
CLIP1-202ENST00000358808 PAF1Q8N7H5 531 aa12.54□□□□□ -0.4
CLIP1-202ENST00000358808 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLIP1-202ENST00000358808 R3HCC1Q9Y3T6 440 aaKnown RBP12.54□□□□□ -0.4
CLIP1-202ENST00000358808 TOP2BQ02880 1626 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 VPS37DQ86XT2 251 aa12.53□□□□□ -0.4
CLIP1-202ENST00000358808 CT47A1Q5JQC4 288 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms