RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 TPM3P06753 285 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 KIAA2012Q0VF49 1180 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 KIF7Q2M1P5 1343 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 IFT140Q96RY7 1462 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 HMGB1P1B2RPK0 211 aaPredicted RBP5.02□□□□□ -1.61
USH2A-201ENST00000307340 ST18O60284 1047 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 HOOK1Q9UJC3 728 aaKnown RBP5.02□□□□□ -1.61
USH2A-201ENST00000307340 NCOA2Q15596 1464 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 CACNA1FO60840 1977 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 GPS2Q13227 327 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 LRRC9Q6ZRR7 1453 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 NOP58Q9Y2X3 529 aaKnown RBP5.02□□□□□ -1.61
USH2A-201ENST00000307340 TAF3Q5VWG9 929 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 INSRP06213 1382 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 PABPN1Q86U42 306 aaKnown RBP eCLIP5.01□□□□□ -1.61
USH2A-201ENST00000307340 SYNJ1O43426 1573 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 CALRP27797 417 aaKnown RBP5.01□□□□□ -1.61
USH2A-201ENST00000307340 FBLN2P98095 1184 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 EFCAB2Q5VUJ9 269 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 PPP6R1Q9UPN7 881 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 CENPQQ7L2Z9 268 aaPredicted RBP5.01□□□□□ -1.61
USH2A-201ENST00000307340 FANCIQ9NVI1 1328 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 LETM1O95202 739 aaPredicted RBP5.01□□□□□ -1.61
USH2A-201ENST00000307340 TUBB4BP68371 445 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 HOXA7P31268 230 aaPredicted RBP5□□□□□ -1.61
USH2A-201ENST00000307340 GOLGA6L4A6NEF3 574 aa5□□□□□ -1.61
USH2A-201ENST00000307340 ABCA10Q8WWZ4 1543 aa5□□□□□ -1.61
USH2A-201ENST00000307340 TXLNBQ8N3L3 684 aa5□□□□□ -1.61
USH2A-201ENST00000307340 REC8O95072 547 aa5□□□□□ -1.61
USH2A-201ENST00000307340 ATAD2Q6PL18 1390 aa5□□□□□ -1.61
USH2A-201ENST00000307340 ZMYM4Q5VZL5 1548 aa5□□□□□ -1.61
USH2A-201ENST00000307340 KIAA1211Q6ZU35 1233 aa5□□□□□ -1.61
USH2A-201ENST00000307340 ZMYM3Q14202 1370 aa5□□□□□ -1.61
USH2A-201ENST00000307340 CENPJQ9HC77 1338 aaPredicted RBP5□□□□□ -1.61
USH2A-201ENST00000307340 VGFO15240 615 aaPredicted RBP5□□□□□ -1.61
USH2A-201ENST00000307340 CAGE1Q8TC20 777 aa5□□□□□ -1.61
USH2A-201ENST00000307340 FGD6Q6ZV73 1430 aa5□□□□□ -1.61
USH2A-201ENST00000307340 BRD4O60885 1362 aaPredicted RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 CCDC70Q6NSX1 233 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 RAB3GAP2Q9H2M9 1393 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 MYBBP1AQ9BQG0 1328 aaKnown RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 CCP110O43303 1012 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 SMC4Q9NTJ3 1288 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 IRX6P78412 446 aaPredicted RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 PRXQ9BXM0 1461 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 PBRM1Q86U86 1689 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 HDGFL2Q7Z4V5 671 aaPredicted RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 TPM2P07951 284 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 FHOD3Q2V2M9 1422 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 E9PSI1 815 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 NKTRP30414 1462 aaKnown RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 CECR2Q9BXF3 1484 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 ARHGEF12Q9NZN5 1544 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 DDX10Q13206 875 aaKnown RBP4.98□□□□□ -1.61
USH2A-201ENST00000307340 HSP90AB4PQ58FF6 505 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 BCANQ96GW7 911 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.98□□□□□ -1.61
USH2A-201ENST00000307340 CAVIN2O95810 425 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 TEX14Q8IWB6 1497 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 PODXL2Q9NZ53 605 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 ZNF777Q9ULD5 760 aaPredicted RBP4.97□□□□□ -1.61
USH2A-201ENST00000307340 NSD2O96028 1365 aa4.97□□□□□ -1.61
USH2A-201ENST00000307340 HMGN5P82970 282 aaKnown RBP4.97□□□□□ -1.61
USH2A-201ENST00000307340 NOL10Q9BSC4 688 aaKnown RBP4.97□□□□□ -1.61
USH2A-201ENST00000307340 GCC2Q8IWJ2 1684 aa4.97□□□□□ -1.61
USH2A-201ENST00000307340 AMER1Q5JTC6 1135 aaPredicted RBP4.97□□□□□ -1.61
USH2A-201ENST00000307340 HIP1O00291 1037 aa4.97□□□□□ -1.61
USH2A-201ENST00000307340 CAMSAP2Q08AD1 1489 aa4.97□□□□□ -1.61
USH2A-201ENST00000307340 PPP1R15AO75807 674 aaPredicted RBP4.96□□□□□ -1.61
USH2A-201ENST00000307340 NUP160Q12769 1436 aa4.96□□□□□ -1.61
USH2A-201ENST00000307340 MFAP1P55081 439 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 PLEKHH1Q9ULM0 1364 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 PTMAP06454 111 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 MRC2Q9UBG0 1479 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 PTPN23Q9H3S7 1636 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 NAT10Q9H0A0 1025 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 PDCP20941 246 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 RDXP35241 583 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 NCBP3Q53F19 620 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 MYO6Q9UM54 1294 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 RNF20Q5VTR2 975 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 RUFY2Q8WXA3 655 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 KIF1BO60333 1816 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 EVC2Q86UK5 1308 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 RTF1Q92541 710 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 NUCB2P80303 420 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 RPGRIP1LQ68CZ1 1315 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 CDR1P51861 262 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 GOLGA2Q08379 1002 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 SOS1Q07889 1333 aaPredicted RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 EIF3DO15371 548 aaKnown RBP eCLIP4.95□□□□□ -1.62
USH2A-201ENST00000307340 IPO9Q96P70 1041 aaKnown RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 DNTTIP2Q5QJE6 756 aaKnown RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 PIP4K2AP48426 406 aaPredicted RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 FAM9BQ8IZU0 186 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 SETQ01105 290 aaPredicted RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 TMX4Q9H1E5 349 aaPredicted RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 ACBD3Q9H3P7 528 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 FAM184AQ8NB25 1140 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 DDX19BQ9UMR2 479 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms