RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Inpp5dQ9ES52 1191 aa13.05□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 ErbinQ80TH2 1402 aa13.05□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Zscan10Q3URR7 782 aa13.04□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Sart3Q9JLI8 962 aaKnown RBP13.04□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Usp40Q8BWR4 1235 aa13.04□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 1700019A02RikA0A087WPV9 146 aa13.04□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Vsig10D3YX43 558 aa13.04□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 CadpsQ80TJ1 1355 aa13.03□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Pde3bQ61409 1100 aa13.03□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 Ralbp1Q62172 648 aa13.03□□□□□ -0.32
Ccdc40-201ENSMUST00000035935 SynmQ70IV5 1561 aa13.02□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 MyclP10166 368 aa13.01□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Txndc2Q6P902 515 aa13.01□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Ksr2Q3UVC0 959 aa13.01□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Ccdc141E9Q8Q6 1531 aa13□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Hsp90b1P08113 802 aaKnown RBP13□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Pde4cQ3UEI1 686 aa13□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Fgd6Q69ZL1 1399 aa13□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Kif7B7ZNG0 1348 aa13□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Myom3A2ABU4 1439 aa12.99□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Birc3O08863 600 aa12.99□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 U2surpQ6NV83 1029 aaKnown RBP12.99□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Naip2Q9QUK4 1447 aa12.99□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Pcf11G3X9Z4 1553 aa12.99□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Tsen2Q6P7W5 460 aa12.99□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Arhgap5P97393 1501 aa12.99□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Ciz1Q8VEH2 845 aa12.99□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Utp14aQ640M1 767 aaKnown RBP12.98□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 GsdmaQ9EST1 446 aa12.98□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Nolc1E9Q5C9 702 aaKnown RBP12.98□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Plekhg5Q66T02 1073 aa12.98□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Cd109Q8R422 1442 aa12.98□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Pabpn1Q8CCS6 302 aaKnown RBP12.98□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Tmco5bQ80X59 307 aa12.98□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Crocc2F6XLV1 1638 aa12.97□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 PnisrA2AJT4 805 aaKnown RBP12.97□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Zfp644E9QA22 1323 aa12.97□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Znf710Q3U288 666 aa12.97□□□□□ -0.33
Ccdc40-201ENSMUST00000035935 Rfx7F8VPJ6 1459 aa12.96□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Cgnl1Q6AW69 1298 aa12.96□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 TchhA0A0B4J1F9 1599 aa12.95□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Casc1Q6TDU8 730 aa12.95□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Irx3P81067 507 aa12.94□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Ttll5Q8CHB8 1328 aa12.94□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Q3TQI7 289 aaKnown RBP12.94□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Plb1Q3TTY0 1478 aa12.94□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Znf326O88291 580 aa12.93□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Mug1P28665 1476 aa12.92□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Rpgrip1lQ8CG73 1264 aa12.92□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Rab11fip3Q8CHD8 1047 aa12.92□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Cluap1Q8R3P7 413 aa12.92□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Shq1Q7TMX5 569 aa12.91□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 NexmifQ5DTT1 1515 aa12.91□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Ylpm1Q9R0I7 1386 aaKnown RBP12.91□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Esx1O88933 382 aa12.91□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Trim58Q5NCC9 485 aa12.91□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Gm14025A2AP89 1413 aa12.9□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Prkrip1Q9CWV6 186 aaKnown RBP12.9□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Pes1Q9EQ61 584 aaKnown RBP12.9□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Stk31Q99MW1 1018 aa12.9□□□□□ -0.34
Ccdc40-201ENSMUST00000035935 Ankrd26Q811D2 1581 aa12.89□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Mfap1aC0HKD8 439 aaKnown RBP12.89□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Mfap1bC0HKD9 439 aaKnown RBP12.89□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 DroshaQ5HZJ0 1373 aaKnown RBP12.89□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Znf330Q922H9 316 aa12.88□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 AU015836B2RUM3 263 aa12.88□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Puf60Q3UEB3 564 aaKnown RBP12.88□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Eif4g2Q62448 906 aaKnown RBP12.88□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 A2mQ6GQT1 1474 aa12.88□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Slc4a2P13808 1237 aaKnown RBP12.88□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Caskin1Q6P9K8 1431 aa12.88□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Smarce1O54941 411 aaKnown RBP12.87□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Plin1Q8CGN5 517 aa12.87□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Adam1bQ8R534 806 aa12.87□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Magi1Q6RHR9 1471 aa12.87□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Plekhh1Q80TI1 1356 aa12.87□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Znf316Q6PGE4 1016 aa12.87□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 4933402E13RikQ9D4D2 429 aa12.87□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Dhx9O70133 1380 aaKnown RBP12.87□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Mlh3A0A1Y7VMP7 1443 aa12.86□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Rab3gap2Q8BMG7 1366 aa12.86□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 G3bp1P97855 465 aaKnown RBP12.86□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Ccdc30Q8BVF4 654 aa12.86□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Ccdc60Q8C4J0 545 aa12.86□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Ap3b2Q9JME5 1082 aa12.86□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 FanciQ8K368 1330 aa12.86□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Grin2aP35436 1464 aa12.86□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Abcc5Q9R1X5 1436 aa12.85□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Gsto1O09131 240 aa12.85□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 HdgfP51859 237 aaKnown RBP12.84□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Atp6v1dP57746 247 aa12.84□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Map3k5O35099 1380 aa12.84□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Mink1Q9JM52 1308 aa12.84□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Mre11Q61216 706 aa12.84□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Atl3Q91YH5 541 aa12.84□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 TnnQ80Z71 1560 aa12.84□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Ppp2r1aQ76MZ3 589 aa12.84□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Kif16bB1AVY7 1312 aa12.84□□□□□ -0.35
Ccdc40-201ENSMUST00000035935 Dnttip2Q8R2M2 758 aaKnown RBP12.83□□□□□ -0.36
Ccdc40-201ENSMUST00000035935 Asxl1P59598 1514 aa12.83□□□□□ -0.36
Retrieved 100 of 22,080 RNA–protein pairs in 27.8 ms