RNA–Protein interactions for RNA: ENSMUST00000033158.5

Ubfd1-201, Transcript of Ubiquitin domain-containing protein UBFD1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubfd1, Length 4,849 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1-201ENSMUST00000033158 Gm973E9Q295 1059 aa20.77■□□□□ 0.92
Ubfd1-201ENSMUST00000033158 Pibf1E9Q6K3 756 aa20.77■□□□□ 0.92
Ubfd1-201ENSMUST00000033158 Fam184bQ0KK56 942 aa20.74■□□□□ 0.91
Ubfd1-201ENSMUST00000033158 Bcl11aQ9QYE3 773 aa20.73■□□□□ 0.91
Ubfd1-201ENSMUST00000033158 Rock1P70335 1354 aa20.73■□□□□ 0.91
Ubfd1-201ENSMUST00000033158 Usp40Q8BWR4 1235 aa20.73■□□□□ 0.91
Ubfd1-201ENSMUST00000033158 Nolc1E9Q5C9 702 aaKnown RBP20.71■□□□□ 0.91
Ubfd1-201ENSMUST00000033158 CgnP59242 1191 aa20.71■□□□□ 0.91
Ubfd1-201ENSMUST00000033158 Stk31Q99MW1 1018 aa20.7■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Ggt6Q6PDE7 497 aa20.7■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Tdrd9Q14BI7 1383 aa20.69■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 GsdmaQ9EST1 446 aa20.69■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Dapk1Q80YE7 1442 aa20.68■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Brpf1B2RRD7 1212 aa20.68■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Ap3b2Q9JME5 1082 aa20.68■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Cttnbp2B9EJA2 1648 aa20.68■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Kif7B7ZNG0 1348 aa20.68■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Ccdc60Q8C4J0 545 aa20.67■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Jph4Q80WT0 628 aa20.67■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Cc2d2bA0A286YDU8 1405 aa20.66■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Smarce1O54941 411 aaKnown RBP20.66■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 ChgaP26339 463 aaKnown RBP20.66■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Cgnl1Q6AW69 1298 aa20.66■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Zscan10Q3URR7 782 aa20.66■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Ralbp1Q62172 648 aa20.65■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Ccdc146E9Q9F7 977 aa20.65■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 Shq1Q7TMX5 569 aa20.65■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 R3hcc1Q8BSI6 488 aa20.65■□□□□ 0.9
Ubfd1-201ENSMUST00000033158 MlecQ6ZQI3 291 aaKnown RBP20.64■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 Esx1O88933 382 aa20.64■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 Atp6v1dP57746 247 aa20.64■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 Chmp3Q9CQ10 224 aa20.64■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 Cabp4Q8VHC5 271 aa20.63■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 G3bp1P97855 465 aaKnown RBP20.6■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 ScribQ80U72 1612 aa20.6■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 Ankrd36D3Z4K0 1415 aa20.6■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 Mink1Q9JM52 1308 aa20.59■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 Ylpm1Q9R0I7 1386 aaKnown RBP20.59■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 Q8BT18 775 aa20.58■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 CrebrfQ8CDG5 640 aaKnown RBP20.58■□□□□ 0.89
Ubfd1-201ENSMUST00000033158 Dnai2A2AC93 623 aa20.58■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 Soga1E1U8D0 1418 aa20.57■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 Efcab5A0JP43 1406 aa20.56■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 Ncoa2Q61026 1462 aa20.56■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 MsnP26041 577 aaKnown RBP20.56■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 Slc4a10Q5DTL9 1118 aa20.56■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 Tpm3-rs7D3Z2H9 248 aa20.55■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 ErbinQ80TH2 1402 aa20.54■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 Nsd2Q8BVE8 1365 aa20.53■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 Rsph3aQ3UFY4 516 aa20.52■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 Trim58Q5NCC9 485 aa20.52■□□□□ 0.88
Ubfd1-201ENSMUST00000033158 Calcoco2A2A6M5 331 aa20.51■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Cald1E9QA15 768 aaKnown RBP20.51■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 SlkO54988 1233 aa20.51■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Pak3Q61036 559 aa20.51■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Rpgrip1lQ8CG73 1264 aa20.5■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Iqgap2Q3UQ44 1575 aa20.5■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Pabpn1Q8CCS6 302 aaKnown RBP20.5■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Shroom4Q1W617 1475 aa20.49■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 AampJ3QN89 436 aa20.49■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Cux1P53564 1515 aa20.48■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Rab11fip3Q8CHD8 1047 aa20.48■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 RdxP26043 583 aaKnown RBP20.47■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Vps8Q0P5W1 1427 aa20.47■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Pde4cQ3UEI1 686 aa20.47■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Ccdc30Q8BVF4 654 aa20.46■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Ciz1Q8VEH2 845 aa20.46■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Top2aQ01320 1528 aaKnown RBP20.46■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Rrp12Q6P5B0 1295 aaKnown RBP20.46■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Prdm16A2A935 1275 aa20.46■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 St18Q80TY4 1045 aa20.46■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Cc2d1aQ8K1A6 943 aa20.46■□□□□ 0.87
Ubfd1-201ENSMUST00000033158 Filip1lQ6P6L0 1131 aa20.45■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Ccer1Q9CQL2 403 aa20.45■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 4933402E13RikQ9D4D2 429 aa20.45■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Zfp644E9QA22 1323 aa20.44■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Gm21190A0A0G2JGJ6 266 aa20.43■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Mre11Q61216 706 aa20.43■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Ak7Q9D2H2 614 aa20.42■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Gsto1O09131 240 aa20.42■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Naip1Q9QWK5 1403 aa20.41■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Tnnt2P50752 301 aa20.41■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Puf60Q3UEB3 564 aaKnown RBP20.41■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Smc4Q8CG47 1286 aa20.41■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Ddrgk1Q80WW9 315 aa20.41■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Cspp1B2RX88 1205 aa20.41■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Triml2E9PW10 424 aa20.41■□□□□ 0.86
Ubfd1-201ENSMUST00000033158 Kif16bB1AVY7 1312 aa20.39■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Sf3a1Q8K4Z5 791 aaKnown RBP20.39■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Casq1O09165 405 aa20.39■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Rad54l2Q99NG0 1466 aa20.39■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Gnai1B2RSH2 354 aa20.38■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 AppP12023 770 aa20.38■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Gnai3Q9DC51 354 aa20.38■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Ift140E9PY46 1464 aa20.38■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Atl3Q91YH5 541 aa20.38■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Usp16Q99LG0 825 aa20.38■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Polr1aO35134 1717 aaKnown RBP20.37■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Rfx1P48377 963 aa20.37■□□□□ 0.85
Ubfd1-201ENSMUST00000033158 Eif2s2Q99L45 331 aaKnown RBP20.37■□□□□ 0.85
Retrieved 100 of 22,080 RNA–protein pairs in 8.9 ms