RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	HOC1	P47124	396 aa		5.52	□□□□□ -1.53
TFB4	YPR056W	YGR042W	P53227	271 aa		5.52	□□□□□ -1.53
TFB4	YPR056W	GIP3	Q03016	1276 aa		5.52	□□□□□ -1.53
TFB4	YPR056W	HSP31	Q04432	237 aa		5.52	□□□□□ -1.53
TFB4	YPR056W	NAT4	Q04751	285 aa		5.52	□□□□□ -1.53
TFB4	YPR056W	SNT309	Q06091	175 aa	Predicted RBP	5.52	□□□□□ -1.53
TFB4	YPR056W	IMA2	Q08295	589 aa		5.52	□□□□□ -1.53
TFB4	YPR056W	YOR387C	Q08910	206 aa		5.52	□□□□□ -1.53
TFB4	YPR056W	CDC13	P32797	924 aa	Known RBP	5.51	□□□□□ -1.53
TFB4	YPR056W	MRPS5	P33759	307 aa		5.51	□□□□□ -1.53
TFB4	YPR056W	SWD2	P36104	329 aa	Predicted RBP	5.51	□□□□□ -1.53
TFB4	YPR056W	YPT10	P38146	199 aa		5.51	□□□□□ -1.53
TFB4	YPR056W	BMT2	P38278	337 aa		5.51	□□□□□ -1.53
TFB4	YPR056W	JLP2	P40206	208 aa		5.51	□□□□□ -1.53
TFB4	YPR056W	RSM25	P40496	264 aa		5.51	□□□□□ -1.53
TFB4	YPR056W	VMA10	P48836	114 aa	Known RBP	5.51	□□□□□ -1.53
TFB4	YPR056W	NAS6	P50086	228 aa		5.51	□□□□□ -1.53
TFB4	YPR056W	COG2	P53271	262 aa		5.51	□□□□□ -1.53
TFB4	YPR056W	PRP38	Q00723	242 aa	Predicted RBP	5.51	□□□□□ -1.53
TFB4	YPR056W	SPC24	Q04477	213 aa		5.51	□□□□□ -1.53
TFB4	YPR056W	PBP4	Q07362	185 aa	Known RBP	5.51	□□□□□ -1.53
TFB4	YPR056W	NDE2	Q07500	545 aa		5.51	□□□□□ -1.53
TFB4	YPR056W	RPS24A	P0CX31	135 aa	Known RBP	5.5	□□□□□ -1.53
TFB4	YPR056W	RPS24B	P0CX32	135 aa	Known RBP	5.5	□□□□□ -1.53
TFB4	YPR056W	MDM10	P18409	493 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	TYR1	P20049	452 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	CHA1	P25379	360 aa	Known RBP	5.5	□□□□□ -1.53
TFB4	YPR056W	RAD24	P32641	659 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	MSN2	P33748	704 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	CCT4	P39078	528 aa	Known RBP	5.5	□□□□□ -1.53
TFB4	YPR056W	SEO1	P39709	593 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	HAT2	P39984	401 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	SYG1	P40528	902 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	AZR1	P50080	613 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	UBP8	P50102	471 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	YPT32	P51996	222 aa	Known RBP	5.5	□□□□□ -1.53
TFB4	YPR056W	YGL117W	P53133	265 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	YIF1	P53845	314 aa	Known RBP	5.5	□□□□□ -1.53
TFB4	YPR056W	DUG3	P53871	357 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	YNL140C	P53910	189 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	ERG13	P54839	491 aa	Known RBP	5.5	□□□□□ -1.53
TFB4	YPR056W	SED5	Q01590	340 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	AAT1	Q01802	451 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	MMT1	Q03218	510 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	PLM2	Q04383	521 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	ASA1	Q06822	443 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	LDS2	Q08218	356 aa		5.5	□□□□□ -1.53
TFB4	YPR056W	TPT1	Q12272	230 aa	Known RBP	5.5	□□□□□ -1.53
TFB4	YPR056W	SKI3	P17883	1432 aa	Known RBP	5.49	□□□□□ -1.53
TFB4	YPR056W	HIS4	P00815	799 aa	Known RBP	5.49	□□□□□ -1.53
TFB4	YPR056W	PTP1	P25044	335 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	NUP2	P32499	720 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	IKI1	P38874	309 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	YER184C	P39961	794 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	MIT1	P40002	666 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	ISC1	P40015	477 aa	Known RBP	5.49	□□□□□ -1.53
TFB4	YPR056W	DDI1	P40087	428 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	IDP2	P41939	412 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	NIF3	P53081	288 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	OKP1	P53298	406 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	MKC7	P53379	596 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	YVH1	Q02256	364 aa	Known RBP	5.49	□□□□□ -1.53
TFB4	YPR056W	YET3	Q07451	203 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	PLB3	Q08108	686 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	MUM3	Q08750	479 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	RKI1	Q12189	258 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	PET20	Q99373	253 aa		5.49	□□□□□ -1.53
TFB4	YPR056W	RPP0	P05317	312 aa	Known RBP	5.48	□□□□□ -1.53
TFB4	YPR056W	CHO1	P08456	276 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	ARF1	P11076	181 aa	Known RBP	5.48	□□□□□ -1.53
TFB4	YPR056W	SAT4	P25333	603 aa	Known RBP	5.48	□□□□□ -1.53
TFB4	YPR056W	SKN1	P33336	771 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	CAF4	P36130	643 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	CBP4	P37267	147 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	HMT1	P38074	348 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	PRS2	P38620	318 aa	Known RBP	5.48	□□□□□ -1.53
TFB4	YPR056W	MMF1	P40185	145 aa	Known RBP	5.48	□□□□□ -1.53
TFB4	YPR056W	CIN5	P40917	295 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	YGL204C	P53089	101 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	PFA5	Q03289	374 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	YDR209C	Q03480	137 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	TRS23	Q03784	219 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	CAC2	Q04199	468 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	OSW1	Q08692	278 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	APC9	Q12107	265 aa		5.48	□□□□□ -1.53
TFB4	YPR056W	WTM1	Q12363	437 aa	Known RBP	5.48	□□□□□ -1.53
TFB4	YPR056W	ATP6	P00854	259 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	RAD52	P06778	471 aa	Known RBP	5.47	□□□□□ -1.53
TFB4	YPR056W	PUT1	P09368	476 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	RNA15	P25299	296 aa	Predicted RBP	5.47	□□□□□ -1.53
TFB4	YPR056W	NAM9	P27929	486 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	FUN19	P28003	413 aa	Predicted RBP	5.47	□□□□□ -1.53
TFB4	YPR056W	MRX3	P38172	270 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	TDA11	P38854	504 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	ATG7	P38862	630 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	FRT2	P39734	528 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	SHO1	P40073	367 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	VRG4	P40107	337 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	ALG8	P40351	577 aa		5.47	□□□□□ -1.53
TFB4	YPR056W	YFR057W	P43625	151 aa		5.47	□□□□□ -1.53

Retrieved 100 of 5,963 RNA–protein pairs in 65.3 ms