RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W SEH1P53011 349 aaKnown RBP5.59□□□□□ -1.51
CAF40YNL288W YGR016WP53209 190 aa5.59□□□□□ -1.51
CAF40YNL288W DCP2P53550 970 aaKnown RBP5.59□□□□□ -1.51
CAF40YNL288W NCE101Q02820 53 aa5.59□□□□□ -1.51
CAF40YNL288W FMP40Q08968 688 aaPredicted RBP5.59□□□□□ -1.51
CAF40YNL288W MSL5Q12186 476 aaKnown RBP RIP-Chip data5.59□□□□□ -1.51not detected
CAF40YNL288W PRP46Q12417 451 aaPredicted RBP5.59□□□□□ -1.51
CAF40YNL288W MRX4Q12467 430 aa5.59□□□□□ -1.51
CAF40YNL288W RPS21BQ3E754 87 aaKnown RBP5.59□□□□□ -1.51
CAF40YNL288W CYR1P08678 2026 aaKnown RBP5.58□□□□□ -1.52
CAF40YNL288W RPP2AP05319 106 aaKnown RBP5.58□□□□□ -1.52
CAF40YNL288W BAR1P12630 587 aa5.58□□□□□ -1.52
CAF40YNL288W FBA1P14540 359 aaKnown RBP5.58□□□□□ -1.52
CAF40YNL288W YAK1P14680 807 aa5.58□□□□□ -1.52
CAF40YNL288W KGD1P20967 1014 aaKnown RBP5.58□□□□□ -1.52
CAF40YNL288W GRR1P24814 1151 aa5.58□□□□□ -1.52
CAF40YNL288W RER1P25560 188 aa5.58□□□□□ -1.52
CAF40YNL288W SNU114P36048 1008 aaKnown RBP5.58□□□□□ -1.52
CAF40YNL288W VHR1P40522 640 aa5.58□□□□□ -1.52
CAF40YNL288W CIN1P40987 1014 aa5.58□□□□□ -1.52
CAF40YNL288W AGP3P43548 558 aa5.58□□□□□ -1.52
CAF40YNL288W VPS73P53142 486 aaKnown RBP5.58□□□□□ -1.52
CAF40YNL288W MPA43P53583 542 aaPredicted RBP5.58□□□□□ -1.52
CAF40YNL288W DBP6P53734 629 aaKnown RBP5.58□□□□□ -1.52
CAF40YNL288W MTQ1P53944 314 aa5.58□□□□□ -1.52
CAF40YNL288W YPL107WQ02873 248 aa5.58□□□□□ -1.52
CAF40YNL288W YLR224WQ05947 369 aa5.58□□□□□ -1.52
CAF40YNL288W TMA10Q06177 86 aa5.58□□□□□ -1.52
CAF40YNL288W YLR446WQ06204 433 aa5.58□□□□□ -1.52
CAF40YNL288W YPR196WQ06595 470 aa5.58□□□□□ -1.52
CAF40YNL288W CYK3Q07533 885 aa5.58□□□□□ -1.52
CAF40YNL288W NOP12Q08208 459 aaKnown RBP5.58□□□□□ -1.52
CAF40YNL288W VIK1Q12045 647 aa5.58□□□□□ -1.52
CAF40YNL288W YDL211CQ12121 372 aa5.58□□□□□ -1.52
CAF40YNL288W TAD3Q9URQ3 322 aa5.58□□□□□ -1.52
CAF40YNL288W IRA1P18963 3092 aa5.57□□□□□ -1.52
CAF40YNL288W ADE8P04161 214 aa5.57□□□□□ -1.52
CAF40YNL288W YOL163WP0CF20 169 aa5.57□□□□□ -1.52
CAF40YNL288W ASF2P32448 525 aaPredicted RBP5.57□□□□□ -1.52
CAF40YNL288W GDH2P33327 1092 aaKnown RBP5.57□□□□□ -1.52
CAF40YNL288W SEF1P34228 1148 aa5.57□□□□□ -1.52
CAF40YNL288W AST1P35183 429 aa5.57□□□□□ -1.52
CAF40YNL288W HRB1P38922 454 aaKnown RBP RIP-Chip data5.57□□□□□ -1.52not detected
CAF40YNL288W PTI1P39927 425 aaPredicted RBP5.57□□□□□ -1.52
CAF40YNL288W THO1P40040 218 aaKnown RBP5.57□□□□□ -1.52
CAF40YNL288W PKP1P40530 394 aa5.57□□□□□ -1.52
CAF40YNL288W NUP57P48837 541 aa5.57□□□□□ -1.52
CAF40YNL288W LSG1P53145 640 aaKnown RBP5.57□□□□□ -1.52
CAF40YNL288W HOL1P53389 586 aa5.57□□□□□ -1.52
CAF40YNL288W SKI8Q02793 397 aaPredicted RBP5.57□□□□□ -1.52
CAF40YNL288W YDR209CQ03480 137 aa5.57□□□□□ -1.52
CAF40YNL288W ERB1Q04660 807 aaKnown RBP5.57□□□□□ -1.52
CAF40YNL288W PAL1Q05518 499 aaKnown RBP5.57□□□□□ -1.52
CAF40YNL288W DCR2Q05924 578 aa5.57□□□□□ -1.52
CAF40YNL288W SEI1Q06058 285 aa5.57□□□□□ -1.52
CAF40YNL288W TAF3Q12297 353 aa5.57□□□□□ -1.52
CAF40YNL288W TIM9O74700 87 aa5.56□□□□□ -1.52
CAF40YNL288W PET9P18239 318 aaKnown RBP5.56□□□□□ -1.52
CAF40YNL288W IDH1P28834 360 aaKnown RBP RIP-Chip data5.56□□□□□ -1.52not detected
CAF40YNL288W RPC82P32349 654 aa5.56□□□□□ -1.52
CAF40YNL288W RPN2P32565 945 aaKnown RBP5.56□□□□□ -1.52
CAF40YNL288W YBR184WP38299 523 aa5.56□□□□□ -1.52
CAF40YNL288W ECM34P38728 170 aa5.56□□□□□ -1.52
CAF40YNL288W YHR097CP38809 366 aaKnown RBP5.56□□□□□ -1.52
CAF40YNL288W NSG1P38837 291 aa5.56□□□□□ -1.52
CAF40YNL288W SWD1P39706 426 aa5.56□□□□□ -1.52
CAF40YNL288W SNL1P40548 159 aa5.56□□□□□ -1.52
CAF40YNL288W MPC1P53157 130 aaKnown RBP5.56□□□□□ -1.52
CAF40YNL288W PDR16P53860 351 aaKnown RBP5.56□□□□□ -1.52
CAF40YNL288W TPS1Q00764 495 aaKnown RBP5.56□□□□□ -1.52
CAF40YNL288W YPL068CQ02749 293 aa5.56□□□□□ -1.52
CAF40YNL288W CTL1Q03220 320 aaKnown RBP5.56□□□□□ -1.52
CAF40YNL288W INP1Q03694 420 aa5.56□□□□□ -1.52
CAF40YNL288W YDR239CQ03780 787 aa5.56□□□□□ -1.52
CAF40YNL288W RNH202Q05635 350 aa5.56□□□□□ -1.52
CAF40YNL288W ENT2Q05785 613 aa5.56□□□□□ -1.52
CAF40YNL288W ARV1Q06541 321 aa5.56□□□□□ -1.52
CAF40YNL288W TMS1Q12116 473 aa5.56□□□□□ -1.52
CAF40YNL288W FAS1P07149 2051 aaKnown RBP5.55□□□□□ -1.52
CAF40YNL288W RPL7AP05737 244 aaKnown RBP5.55□□□□□ -1.52
CAF40YNL288W ARF1P11076 181 aaKnown RBP5.55□□□□□ -1.52
CAF40YNL288W SNF4P12904 322 aa5.55□□□□□ -1.52
CAF40YNL288W ERD1P16151 362 aa5.55□□□□□ -1.52
CAF40YNL288W MRPL6P32904 214 aa5.55□□□□□ -1.52
CAF40YNL288W YPT7P32939 208 aa5.55□□□□□ -1.52
CAF40YNL288W OM14P38325 134 aa5.55□□□□□ -1.52
CAF40YNL288W SIC1P38634 284 aa5.55□□□□□ -1.52
CAF40YNL288W AST2P39945 430 aaKnown RBP5.55□□□□□ -1.52
CAF40YNL288W SOK1P40317 901 aa5.55□□□□□ -1.52
CAF40YNL288W FAR7P43592 221 aa5.55□□□□□ -1.52
CAF40YNL288W EMC2P47133 292 aaKnown RBP5.55□□□□□ -1.52
CAF40YNL288W YJR142WP47173 342 aa5.55□□□□□ -1.52
CAF40YNL288W IMD4P50094 524 aaKnown RBP5.55□□□□□ -1.52
CAF40YNL288W MRK1P50873 501 aa5.55□□□□□ -1.52
CAF40YNL288W YGR168CP53293 376 aa5.55□□□□□ -1.52
CAF40YNL288W RHO5P53879 331 aaKnown RBP5.55□□□□□ -1.52
CAF40YNL288W ATG21Q02887 496 aa5.55□□□□□ -1.52
CAF40YNL288W YDR541CQ03049 344 aa5.55□□□□□ -1.52
CAF40YNL288W PFA5Q03289 374 aa5.55□□□□□ -1.52
CAF40YNL288W CGI121Q03705 181 aaKnown RBP5.55□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 29.4 ms