RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 KLHL14Q9P2G3 628 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 MST1RQ04912 1400 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 SMIM23A6NLE4 172 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 KCNJ18B7U540 433 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 ZNF263O14978 683 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 CCR3P51677 355 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 RAB15P59190 212 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 ACVR2BQ13705 512 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 KCNJ12Q14500 433 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 KLHDC7AQ5VTJ3 777 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 NELFCDQ8IXH7 590 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 VPS50Q96JG6 964 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 HEPHQ9BQS7 1158 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 HOXC10Q9NYD6 342 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 ZNF212Q9UDV6 495 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 TTC7AQ9ULT0 858 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-226ENST00000556825 PCDHA13Q9Y5I0 950 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 NOX1Q9Y5S8 564 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 TCP11X1B4DZS4 312 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 IGHMBP2P38935 993 aaKnown RBP14.85□□□□□ -0.03
SHMT2-226ENST00000556825 RXRGP48443 463 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 MAP3K10Q02779 954 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 MGAT5Q09328 741 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 LRP8Q14114 963 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 CNGA3Q16281 694 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 FAM209AQ5JX71 171 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 PPP1R14CQ8TAE6 165 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 PPP1R10Q96QC0 940 aaKnown RBP14.85□□□□□ -0.03
SHMT2-226ENST00000556825 STK33Q9BYT3 514 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 TANGO6Q9C0B7 1094 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 METTL14Q9HCE5 456 aaKnown RBP14.85□□□□□ -0.03
SHMT2-226ENST00000556825 KRT82Q9NSB4 513 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 GJB4Q9NTQ9 266 aa14.85□□□□□ -0.03
SHMT2-226ENST00000556825 UMODL1Q5DID0 1318 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 GOLGA8TH3BQL2 631 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 GOLGA8HP0CJ92 632 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 PIM1P11309 404 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-226ENST00000556825 SCG2P13521 617 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 MARK3P27448 753 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 EPHB2P29323 1055 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 TKTP29401 623 aaKnown RBP14.84□□□□□ -0.03
SHMT2-226ENST00000556825 RASSF2P50749 326 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 C4orf50Q6ZRC1 276 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 PASD1Q8IV76 773 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 KBTBD2Q8IY47 623 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 STARD8Q92502 1023 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 IFIH1Q9BYX4 1025 aaKnown RBP14.84□□□□□ -0.03
SHMT2-226ENST00000556825 TLE6Q9H808 572 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 PARVBQ9HBI1 364 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 TRIM17Q9Y577 477 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 USP6P35125 1406 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 NCAPD2Q15021 1401 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 SH3PXD2BA1X283 911 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 TRAFD1O14545 582 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-226ENST00000556825 CAPN9O14815 690 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 VILLO15195 856 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 ADAM23O75077 832 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 EYA4O95677 639 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 AGTP01019 485 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 SATL1Q86VE3 508 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 VSIG1Q86XK7 387 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 DDX42Q86XP3 938 aaKnown RBP eCLIP14.84□□□□□ -0.03
SHMT2-226ENST00000556825 COL23A1Q86Y22 540 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-226ENST00000556825 ECHDC2Q86YB7 292 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 CEP70Q8NHQ1 597 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 PLEKHO2Q8TD55 490 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 NECTIN2Q92692 538 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 SLC7A6OSQ96CW6 309 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-226ENST00000556825 MAELQ96JY0 434 aaKnown RBP14.84□□□□□ -0.03
SHMT2-226ENST00000556825 CEP295NLQ96MC4 621 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 NSMCE3Q96MG7 304 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 STX18Q9P2W9 335 aaKnown RBP14.84□□□□□ -0.03
SHMT2-226ENST00000556825 HAO1Q9UJM8 370 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 TMEM59LQ9UK28 342 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 CTNND2Q9UQB3 1225 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 COL15A1P39059 1388 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 NRKQ7Z2Y5 1582 aa14.84□□□□□ -0.03
SHMT2-226ENST00000556825 PXDNLA1KZ92 1463 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 CCDC169A6NNP5 214 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 SPDYE16A6NNV3 312 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-226ENST00000556825 GNAT3A8MTJ3 354 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 ADCY3O60266 1144 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 DGKIO75912 1065 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 OR6B1O95007 311 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 GRIA2P42262 883 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 VPS41P49754 854 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 NEK3P51956 506 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 ARHGEF6Q15052 776 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 GJC2Q5T442 439 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-226ENST00000556825 CCSAPQ6IQ19 270 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-226ENST00000556825 INTS8Q75QN2 995 aaKnown RBP14.83□□□□□ -0.04
SHMT2-226ENST00000556825 KLHL7Q8IXQ5 586 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 MYLK2Q9H1R3 596 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 METTL5Q9NRN9 209 aaKnown RBP14.83□□□□□ -0.04
SHMT2-226ENST00000556825 DDX18Q9NVP1 670 aaKnown RBP14.83□□□□□ -0.04
SHMT2-226ENST00000556825 MYH1P12882 1939 aa14.83□□□□□ -0.04
SHMT2-226ENST00000556825 TTC34A8MYJ7 566 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 RASA4BC9J798 803 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 RASA4O43374 803 aa14.82□□□□□ -0.04
SHMT2-226ENST00000556825 FGFR1OPO95684 399 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms