RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RAB11FIP3O75154 756 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 TGFB3P10600 412 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 GLULP15104 373 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 LAG3P18627 525 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 SARSP49591 514 aaKnown RBP5.52□□□□□ -1.53
LIMS1-214ENST00000542845 MFAP1P55081 439 aaKnown RBP5.52□□□□□ -1.53
LIMS1-214ENST00000542845 ADAM17P78536 824 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 PLCB3Q01970 1234 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 SEMA3FQ13275 785 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 BMS1Q14692 1282 aaKnown RBP5.52□□□□□ -1.53
LIMS1-214ENST00000542845 PTPN14Q15678 1187 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 GRIK4Q16099 956 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 QRICH1Q2TAL8 776 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 TSHZ3Q63HK5 1081 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 TAF2Q6P1X5 1199 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 DCLRE1AQ6PJP8 1040 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 TSSK4Q6SA08 328 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 CCDC149Q6ZUS6 474 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 SLC44A3Q8N4M1 653 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 MRPL43Q8N983 215 aaKnown RBP5.52□□□□□ -1.53
LIMS1-214ENST00000542845 KBTBD3Q8NAB2 608 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 RNF169Q8NCN4 708 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 GLG1Q92896 1179 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 ZNF558Q96NG5 402 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 PPP1R16BQ96T49 567 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 GPR20Q99678 358 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 ATP6V0A4Q9HBG4 840 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 PARD6AQ9NPB6 346 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 SPG21Q9NZD8 308 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 GMEB2Q9UKD1 530 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 RAB23Q9ULC3 237 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 ZMIZ1Q9ULJ6 1067 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 PCDHGC3Q9UN70 934 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 LZTS1Q9Y250 596 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.52□□□□□ -1.53
LIMS1-214ENST00000542845 TRPV2Q9Y5S1 764 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 MIA3Q5JRA6 1907 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 RALGAPA1Q6GYQ0 2036 aa5.52□□□□□ -1.53
LIMS1-214ENST00000542845 C2orf16Q68DN1 1984 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 SOBPA7XYQ1 873 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 GDF9O60383 454 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 RPS6KA5O75582 802 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 ZFYP08048 801 aaPredicted RBP5.51□□□□□ -1.53
LIMS1-214ENST00000542845 RLBP1P12271 317 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 NCLP19338 710 aaKnown RBP5.51□□□□□ -1.53
LIMS1-214ENST00000542845 TCF7P36402 384 aaPredicted RBP5.51□□□□□ -1.53
LIMS1-214ENST00000542845 METAP2P50579 478 aaKnown RBP eCLIP5.51□□□□□ -1.536e-8■■■■■ 30.3
LIMS1-214ENST00000542845 FUT2Q10981 343 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 NEDD9Q14511 834 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 UBXN2BQ14CS0 331 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 NONOQ15233 471 aaKnown RBP eCLIP5.51□□□□□ -1.53
LIMS1-214ENST00000542845 MARCH8Q5T0T0 291 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 GPATCH4Q5T3I0 446 aaKnown RBP5.51□□□□□ -1.53
LIMS1-214ENST00000542845 N4BP2L1Q5TBK1 243 aaPredicted RBP5.51□□□□□ -1.53
LIMS1-214ENST00000542845 IL31Q6EBC2 164 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 PRR23BQ6ZRT6 265 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 LRRC55Q6ZSA7 311 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 VSIG10LQ86VR7 867 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 MAML2Q8IZL2 1156 aaPredicted RBP5.51□□□□□ -1.53
LIMS1-214ENST00000542845 ABI1Q8IZP0 508 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 TRAPPC12Q8WVT3 735 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 BCO2Q9BYV7 579 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 CELF4Q9BZC1 486 aaKnown RBP5.51□□□□□ -1.53
LIMS1-214ENST00000542845 TMX1Q9H3N1 280 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 DZANK1Q9NVP4 752 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 PKD2L1Q9P0L9 805 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 DLGAP2Q9P1A6 1054 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 IGSF9Q9P2J2 1179 aa5.51□□□□□ -1.53
LIMS1-214ENST00000542845 SPTBN2O15020 2390 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 DENND4AQ7Z401 1863 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 CACNA1IQ9P0X4 2223 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 FRYLO94915 3013 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 C1QTNF9BB2RNN3 333 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 CFAP99D6REC4 459 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 SLC30A4O14863 429 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 TBC1D4O60343 1298 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 HMMRO75330 724 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 SSBP05455 408 aaKnown RBP eCLIP5.5□□□□□ -1.53
LIMS1-214ENST00000542845 PROS1P07225 676 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 C1QTNF9P0C862 333 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 SRFP11831 508 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 INSRRP14616 1297 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 CD72P21854 359 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 KLRC2P26717 231 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 PPM1AP35813 382 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 ALDH7A1P49419 539 aaKnown RBP5.5□□□□□ -1.53
LIMS1-214ENST00000542845 KRT76Q01546 638 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 SNW1Q13573 536 aaKnown RBP5.5□□□□□ -1.53
LIMS1-214ENST00000542845 LETM2Q2VYF4 491 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 GNPTABQ3T906 1256 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 LRSAM1Q6UWE0 723 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 METTL7BQ6UX53 244 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 SLC24A5Q71RS6 500 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 GPR149Q86SP6 731 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 VPS52Q8N1B4 723 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 PJA1Q8NG27 643 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 NETO1Q8TDF5 533 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 PANK1Q8TE04 598 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 KCTD12Q96CX2 325 aaKnown RBP5.5□□□□□ -1.53
LIMS1-214ENST00000542845 AMNQ9BXJ7 453 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms