RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 ADCK5Q3MIX3 580 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 GNPTABQ3T906 1256 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 MUM1L1Q5H9M0 696 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 DSTYKQ6XUX3 929 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 ENOSF1Q7L5Y1 443 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 STRA8Q7Z7C7 330 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 PASD1Q8IV76 773 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 KRT222Q8N1A0 295 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 USP38Q8NB14 1042 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 ZBED3Q96IU2 234 aaPredicted RBP10.61□□□□□ -0.71
USP53-207ENST00000510852 CDHR5Q9HBB8 845 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 DDX4Q9NQI0 724 aaKnown RBP10.61□□□□□ -0.71
USP53-207ENST00000510852 KLHL11Q9NVR0 708 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 PCDHGC5Q9Y5F6 944 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 ARPC4-TTLL3A0A0A6YYG9 625 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 USP2O75604 605 aaPredicted RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 EGFRP00533 1210 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 RPS2P15880 293 aaKnown RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 FERP16591 822 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 PBLDP30039 288 aaPredicted RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 HOXC12P31275 282 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 PPARAQ07869 468 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 CNGA3Q16281 694 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 STOX1Q6ZVD7 989 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 SAMD7Q7Z3H4 446 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 ZBTB46Q86UZ6 589 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 TBC1D10CQ8IV04 446 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 CNDP2Q96KP4 475 aaKnown RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 JAKMIP1Q96N16 626 aaKnown RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 PLEKHG4BQ96PX9 1271 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 GPATCH1Q9BRR8 931 aaKnown RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 ABCF3Q9NUQ8 709 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 GPRC5DQ9NZD1 345 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 MTRRQ9UBK8 725 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 ARPP21Q9UBL0 812 aaPredicted RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 DDX20Q9UHI6 824 aaKnown RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 SAP30BPQ9UHR5 308 aaKnown RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 MTF2Q9Y483 593 aaPredicted RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 PTCH2Q9Y6C5 1203 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 CLRN2A0PK11 232 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 E7EWF7 191 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 H7C1D1 291 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 SMIM22K7EJ46 135 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 WNT10BO00744 389 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 SART1O43290 800 aaKnown RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 KRT1P04264 644 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 CYP2D6P10635 497 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 POLD2P49005 469 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 KRT32Q14532 448 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 CCNG2Q16589 344 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 SBK1Q52WX2 424 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 CCDC186Q7Z3E2 898 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 SEC16BQ96JE7 1060 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 IDI2Q9BXS1 227 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 NIFKQ9BYG3 293 aaKnown RBP10.6□□□□□ -0.71
USP53-207ENST00000510852 AGTPBP1Q9UPW5 1226 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 ANGPTL3Q9Y5C1 460 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 TIAM2Q8IVF5 1701 aa10.6□□□□□ -0.71
USP53-207ENST00000510852 GOLGA6L10A0A0M3HER8 536 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 HOXC11O43248 304 aaPredicted RBP10.59□□□□□ -0.71
USP53-207ENST00000510852 AHCYL1O43865 530 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 GNA15P30679 374 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 EVX2Q03828 476 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 SYCP1Q15431 976 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 TBC1D25Q3MII6 688 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 DPY19L2Q6NUT2 758 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 COG8Q96MW5 612 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 TM6SF1Q9BZW5 370 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 CCDC113Q9H0I3 377 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 ST7Q9NRC1 585 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 TCP11L1Q9NUJ3 509 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 ZNF70Q9UC06 446 aaPredicted RBP10.59□□□□□ -0.71
USP53-207ENST00000510852 FAM198AQ9UFP1 575 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 ZC3H7BQ9UGR2 993 aaKnown RBP10.59□□□□□ -0.71
USP53-207ENST00000510852 RFPL1O75677 317 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 TGDSO95455 350 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 STAMBPO95630 424 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 POLR3DP05423 398 aaPredicted RBP10.59□□□□□ -0.71
USP53-207ENST00000510852 ALAS1P13196 640 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 CASTP20810 708 aaKnown RBP10.59□□□□□ -0.71
USP53-207ENST00000510852 PSMA5P28066 241 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 WEE1P30291 646 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 EPS15P42566 896 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 COL9A3Q14050 684 aaPredicted RBP10.59□□□□□ -0.71
USP53-207ENST00000510852 PPP2R5DQ14738 602 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 C12orf60Q5U649 245 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 RETSATQ6NUM9 610 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 RNF168Q8IYW5 571 aaPredicted RBP10.59□□□□□ -0.71
USP53-207ENST00000510852 MFSD3Q96ES6 412 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 NAF1Q96HR8 494 aaKnown RBP10.59□□□□□ -0.71
USP53-207ENST00000510852 UPF3BQ9BZI7 483 aaKnown RBP10.59□□□□□ -0.71
USP53-207ENST00000510852 SEMA4AQ9H3S1 761 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 AIPL1Q9NZN9 384 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 TMOD2Q9NZR1 351 aa10.59□□□□□ -0.71
USP53-207ENST00000510852 KRBA1A5PL33 1030 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 LACTBL1A8MY62 500 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 M0R3H8 397 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 MASP2O00187 686 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 P4HA2O15460 535 aa10.58□□□□□ -0.72
USP53-207ENST00000510852 ZNF254O75437 659 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms