RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ICAM1P05362 532 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 ZFYP08048 801 aaPredicted RBP7.84□□□□□ -1.15
HDAC3-209ENST00000486618 SELPP16109 830 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 KCNA5P22460 613 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 GTF2F1P35269 517 aaKnown RBP eCLIP7.84□□□□□ -1.15
HDAC3-209ENST00000486618 ALDH5A1P51649 535 aaPredicted RBP7.84□□□□□ -1.15
HDAC3-209ENST00000486618 ERVK-21P61565 698 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 WDR5P61964 334 aaKnown RBP7.84□□□□□ -1.15
HDAC3-209ENST00000486618 TFAP4Q01664 338 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 BAATQ14032 418 aaPredicted RBP7.84□□□□□ -1.15
HDAC3-209ENST00000486618 PPP2R5BQ15173 497 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 PTGISQ16647 500 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 TSNAXIP1Q2TAA8 658 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 CNKSR3Q6P9H4 555 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 KCTD1Q719H9 257 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 ANKMY2Q8IV38 441 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 ALDH16A1Q8IZ83 802 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 STAG2Q8N3U4 1231 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 GDPD5Q8WTR4 605 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 SCFD2Q8WU76 684 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 PIK3R5Q8WYR1 880 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 APPBP2Q92624 585 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 SUGCTQ9HAC7 445 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 PCDH12Q9NPG4 1184 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 SFMBT1Q9UHJ3 866 aa7.84□□□□□ -1.15
HDAC3-209ENST00000486618 DDX49Q9Y6V7 483 aaKnown RBP7.84□□□□□ -1.15
HDAC3-209ENST00000486618 PLIN4Q96Q06 1357 aa7.84□□□□□ -1.16
HDAC3-209ENST00000486618 PTPDC1A2A3K4 754 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 LCHNA4D1U4 455 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 RNF113AO15541 343 aaKnown RBP7.83□□□□□ -1.16
HDAC3-209ENST00000486618 GPAA1O43292 621 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 DCXO43602 365 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 LGR5O75473 907 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 GJB5O95377 273 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 HSD3B2P26439 372 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 DGKGP49619 791 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 CHMP4BP1P59074 171 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 NHLH1Q02575 133 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 POU5F1BQ06416 359 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 SFSWAPQ12872 951 aaKnown RBP7.83□□□□□ -1.16
HDAC3-209ENST00000486618 IKBKEQ14164 716 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 PLA2G4EQ3MJ16 856 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 LINC00114Q6XXX2 140 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 CHSY3Q70JA7 882 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 LRRC8DQ7L1W4 858 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 RPAINQ86UA6 219 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 NT5DC4Q86YG4 428 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 DRC7Q8IY82 874 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 IFNL3Q8IZI9 196 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 KBTBD3Q8NAB2 608 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 ATL2Q8NHH9 583 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.83□□□□□ -1.16
HDAC3-209ENST00000486618 OSBP2Q969R2 916 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 SUSD3Q96L08 255 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 UPF3BQ9BZI7 483 aaKnown RBP7.83□□□□□ -1.16
HDAC3-209ENST00000486618 LRRCC1Q9C099 1032 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 ANAPC4Q9UJX5 808 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 MTUS1Q9ULD2 1270 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 DDX19BQ9UMR2 479 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 STX8Q9UNK0 236 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 REV3LO60673 3130 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 MYO7AQ13402 2215 aa7.83□□□□□ -1.16
HDAC3-209ENST00000486618 COL4A4P53420 1690 aaPredicted RBP7.83□□□□□ -1.16
HDAC3-209ENST00000486618 SIP14410 1827 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 LCTP09848 1927 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 PTPRSQ13332 1948 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 LINC01553A4QN01 128 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 ANKRD33BA6NCL7 494 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 TSPY2A6NKD2 308 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 IGHA1P01876 353 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 CXCL10P02778 98 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 ITGB2P05107 769 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 TXNP10599 105 aaKnown RBP7.82□□□□□ -1.16
HDAC3-209ENST00000486618 IL9P15248 144 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 CASTP20810 708 aaKnown RBP7.82□□□□□ -1.16
HDAC3-209ENST00000486618 CALML3P27482 149 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 COL8A1P27658 744 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 SNAP25P60880 206 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 TYRO3Q06418 890 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 RNF207Q6ZRF8 634 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 SPRED2Q7Z698 418 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 SESTD1Q86VW0 696 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 DNERQ8NFT8 737 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 PANK1Q8TE04 598 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 DCAF4Q8WV16 495 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 CHMP4CQ96CF2 233 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 IL17RAQ96F46 866 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 FBXL18Q96ME1 805 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 SAMD11Q96NU1 681 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 HINFPQ9BQA5 517 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 NAPBQ9H115 298 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 ZSWIM4Q9H7M6 989 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 IFT122Q9HBG6 1241 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 EPB41L4AQ9HCS5 686 aaPredicted RBP7.82□□□□□ -1.16
HDAC3-209ENST00000486618 ECHDC1Q9NTX5 307 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 PRKAG3Q9UGI9 489 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 INSL6Q9Y581 213 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 ZNF318Q5VUA4 2279 aa7.82□□□□□ -1.16
HDAC3-209ENST00000486618 NFIBO00712 420 aa7.81□□□□□ -1.16
HDAC3-209ENST00000486618 DEFB103AP81534 67 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms