RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 DNAJC8O75937 253 aaPredicted RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 PARNO95453 639 aaKnown RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 NFX1Q12986 1120 aaKnown RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 KIAA1841Q6NSI8 718 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 LVRNQ6Q4G3 990 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 TMEM270Q6UE05 265 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 HACE1Q8IYU2 909 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 FGFR1OP2Q9NVK5 253 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 STX18Q9P2W9 335 aaKnown RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 ERICH1Q86X53 443 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 USP33Q8TEY7 942 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 ASCC2Q9H1I8 757 aaPredicted RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 BHMT2Q9H2M3 363 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 ZNF804BA4D1E1 1349 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 TRIM60Q495X7 471 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 NLRP14Q86W24 1093 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 SLC44A5Q8NCS7 719 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 TRIM55Q9BYV6 548 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 SIK2Q9H0K1 926 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 USP17L5A8MUK1 530 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 SNX2O60749 519 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 CENPUQ71F23 418 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 ZBTB38Q8NAP3 1195 aaPredicted RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 DRC3Q9H069 523 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 PHF20L1A8MW92 1017 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 XPO1O14980 1071 aaKnown RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 PER1O15534 1290 aaPredicted RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 PPP6R2O75170 966 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 PDIA2Q13087 525 aaKnown RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 HEATR4Q86WZ0 1026 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 ETNK1Q9HBU6 452 aa13.5□□□□□ -0.25
USP38-201ENST00000307017 SRP68Q9UHB9 627 aaKnown RBP13.5□□□□□ -0.25
USP38-201ENST00000307017 ADGRA2Q96PE1 1338 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 PPEF1O14829 653 aaPredicted RBP13.49□□□□□ -0.25
USP38-201ENST00000307017 MAN1A2O60476 641 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 TSC22D2O75157 780 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 OCM2P0CE71 109 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 OCMP0CE72 109 aaPredicted RBP13.49□□□□□ -0.25
USP38-201ENST00000307017 RESTQ13127 1097 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 DSTYKQ6XUX3 929 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 DHX40Q8IX18 779 aaKnown RBP13.49□□□□□ -0.25
USP38-201ENST00000307017 MIER2Q8N344 545 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 C11orf70Q9BRQ4 267 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 KLC2Q9H0B6 622 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 LMCD1Q9NZU5 365 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 TEKT2Q9UIF3 430 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 MFAP3LO75121 409 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 SMNDC1O75940 238 aaKnown RBP eCLIP13.49□□□□□ -0.25
USP38-201ENST00000307017 CHGBP05060 677 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 BBOF1Q8ND07 529 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 YIPF2Q9BWQ6 316 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP21Q9UK80 565 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 NBNO60934 754 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 TRIM37O94972 964 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 FCER1AP12319 257 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 FAM160B1Q5W0V3 765 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 KLF6Q99612 283 aaPredicted RBP13.49□□□□□ -0.25
USP38-201ENST00000307017 INSRP06213 1382 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L15C9J2P7 530 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L13C9JLJ4 530 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L11C9JVI0 530 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L18D6R9N7 530 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L22D6RA61 530 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L17D6RBQ6 530 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L19D6RCP7 530 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L20D6RJB6 530 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L24Q0WX57 530 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 USP17L6PQ6QN14 398 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 LAYNQ6UX15 382 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 CD248Q9HCU0 757 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 NRBP2Q9NSY0 501 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 APOBEC2Q9Y235 224 aaKnown RBP13.49□□□□□ -0.25
USP38-201ENST00000307017 DENND4BO75064 1496 aaPredicted RBP13.49□□□□□ -0.25
USP38-201ENST00000307017 IQANK1A0A1B0GTG1 560 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 CCND2P30279 289 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 FAM81BQ96LP2 452 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 CNBD2Q96M20 576 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 TRIM51Q9BSJ1 452 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 KDM5AP29375 1690 aaKnown RBP13.49□□□□□ -0.25
USP38-201ENST00000307017 MYO1GB0I1T2 1018 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 NBPF20Q3BBV1 942 aa13.49□□□□□ -0.25
USP38-201ENST00000307017 CC2D1AQ6P1N0 951 aaPredicted RBP13.49□□□□□ -0.25
USP38-201ENST00000307017 TTLL1O95922 423 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 MRPS15P82914 257 aaKnown RBP13.48□□□□□ -0.25
USP38-201ENST00000307017 SPARCL1Q14515 664 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 IFT43Q96FT9 208 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 EFHD1Q9BUP0 239 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 NDFIP2Q9NV92 336 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 SH2B2O14492 632 aaPredicted RBP13.48□□□□□ -0.25
USP38-201ENST00000307017 MAGEA9P43362 315 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 CSE1LP55060 971 aaKnown RBP13.48□□□□□ -0.25
USP38-201ENST00000307017 CDC37Q16543 378 aaPredicted RBP13.48□□□□□ -0.25
USP38-201ENST00000307017 METTL23Q86XA0 190 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 DCPSQ96C86 337 aaKnown RBP13.48□□□□□ -0.25
USP38-201ENST00000307017 NRBF2Q96F24 287 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 GOLPH3Q9H4A6 298 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 RAVER2Q9HCJ3 691 aaKnown RBP13.48□□□□□ -0.25
USP38-201ENST00000307017 CNOT8Q9UFF9 292 aaKnown RBP13.48□□□□□ -0.25
USP38-201ENST00000307017 POTEFA5A3E0 1075 aa13.48□□□□□ -0.25
USP38-201ENST00000307017 PFDN6O15212 129 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms