RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W MRX8Q05473 314 aa0.54□□□□□ -2.32
PRP42YDR235W GAS2Q06135 555 aa0.54□□□□□ -2.32
PRP42YDR235W DDC1Q08949 612 aa0.54□□□□□ -2.32
PRP42YDR235W YPR096CO13587 100 aa0.53□□□□□ -2.32
PRP42YDR235W RPL23AP0CX41 137 aaKnown RBP0.53□□□□□ -2.32
PRP42YDR235W RPL23BP0CX42 137 aaKnown RBP0.53□□□□□ -2.32
PRP42YDR235W RNA1P11745 407 aaKnown RBP0.53□□□□□ -2.32
PRP42YDR235W UNG1P12887 359 aa0.53□□□□□ -2.32
PRP42YDR235W MRPL8P22353 238 aa0.53□□□□□ -2.32
PRP42YDR235W MSP1P28737 362 aa0.53□□□□□ -2.32
PRP42YDR235W SPS19P32573 292 aaKnown RBP0.53□□□□□ -2.32
PRP42YDR235W ANP1P32629 500 aa0.53□□□□□ -2.32
PRP42YDR235W TOA2P32774 122 aa0.53□□□□□ -2.32
PRP42YDR235W AST1P35183 429 aa0.53□□□□□ -2.32
PRP42YDR235W KAP104P38217 918 aaKnown RBP0.53□□□□□ -2.32
PRP42YDR235W SPP381P38282 291 aaPredicted RBP0.53□□□□□ -2.32
PRP42YDR235W RRT13P40042 185 aa0.53□□□□□ -2.32
PRP42YDR235W CTK3P46963 296 aaPredicted RBP0.53□□□□□ -2.32
PRP42YDR235W YJL144WP47009 104 aa0.53□□□□□ -2.32
PRP42YDR235W CDH1P53197 566 aa0.53□□□□□ -2.32
PRP42YDR235W HST4P53688 370 aa0.53□□□□□ -2.32
PRP42YDR235W SLT2Q00772 484 aa0.53□□□□□ -2.32
PRP42YDR235W MEH1Q02205 184 aa0.53□□□□□ -2.32
PRP42YDR235W RMI1Q02685 241 aa0.53□□□□□ -2.32
PRP42YDR235W MRX11Q03079 207 aa0.53□□□□□ -2.32
PRP42YDR235W GAT3Q07928 141 aa0.53□□□□□ -2.32
PRP42YDR235W AAD15Q08361 143 aa0.53□□□□□ -2.32
PRP42YDR235W YDL109CQ12103 647 aa0.53□□□□□ -2.32
PRP42YDR235W ATP16Q12165 160 aa0.53□□□□□ -2.32
PRP42YDR235W HIF1Q12373 385 aa0.53□□□□□ -2.32
PRP42YDR235W SMC6Q12749 1114 aa0.53□□□□□ -2.32
PRP42YDR235W YOL085CQ99345 113 aa0.53□□□□□ -2.32
PRP42YDR235W FLO11P08640 1367 aa0.53□□□□□ -2.32
PRP42YDR235W AUS1Q08409 1394 aa0.53□□□□□ -2.32
PRP42YDR235W STE2D6VTK4 431 aa0.53□□□□□ -2.33
PRP42YDR235W RPS14AP06367 137 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W FUS3P16892 353 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W MIR1P23641 311 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W PMT2P31382 759 aa0.53□□□□□ -2.33
PRP42YDR235W SSE1P32589 693 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W CBF5P33322 483 aaKnown RBP RIP-Chip data0.53□□□□□ -2.33not detected
PRP42YDR235W SHE3P38272 425 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W YGP1P38616 354 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W SRP72P38688 640 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W YPT35P38815 214 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W TRR2P38816 342 aa0.53□□□□□ -2.33
PRP42YDR235W YHR177WP38867 453 aa0.53□□□□□ -2.33
PRP42YDR235W RPS14BP39516 138 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W BUD27P43573 796 aaKnown RBP RIP-Chip data0.53□□□□□ -2.33not detected
PRP42YDR235W AIM23P47015 356 aa0.53□□□□□ -2.33
PRP42YDR235W YJR054WP47114 497 aa0.53□□□□□ -2.33
PRP42YDR235W ASN2P49090 572 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W YGR015CP53208 328 aa0.53□□□□□ -2.33
PRP42YDR235W CIK1Q01649 594 aa0.53□□□□□ -2.33
PRP42YDR235W API2Q04413 109 aa0.53□□□□□ -2.33
PRP42YDR235W YLH47Q06493 454 aa0.53□□□□□ -2.33
PRP42YDR235W NDL1Q06568 189 aa0.53□□□□□ -2.33
PRP42YDR235W SHS1Q07657 551 aa0.53□□□□□ -2.33
PRP42YDR235W YOL029CQ08187 201 aa0.53□□□□□ -2.33
PRP42YDR235W SPE3Q12074 293 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W RPN5Q12250 445 aaKnown RBP0.53□□□□□ -2.33
PRP42YDR235W YAL067W-AQ8TGK6 75 aa0.53□□□□□ -2.33
PRP42YDR235W YOR338WQ99326 363 aa0.53□□□□□ -2.33
PRP42YDR235W RPL1AP0CX43 217 aaKnown RBP0.52□□□□□ -2.33
PRP42YDR235W RPL1BP0CX44 217 aaKnown RBP0.52□□□□□ -2.33
PRP42YDR235W RRP7P25368 297 aaPredicted RBP0.52□□□□□ -2.33
PRP42YDR235W SKG6P32900 734 aaPredicted RBP0.52□□□□□ -2.33
PRP42YDR235W YKR015CP36111 568 aa0.52□□□□□ -2.33
PRP42YDR235W DBP7P36120 742 aaKnown RBP0.52□□□□□ -2.33
PRP42YDR235W SHE1P38200 338 aa0.52□□□□□ -2.33
PRP42YDR235W YHR182WP38870 785 aa0.52□□□□□ -2.33
PRP42YDR235W GGC1P38988 300 aa0.52□□□□□ -2.33
PRP42YDR235W YIL059CP40520 121 aa0.52□□□□□ -2.33
PRP42YDR235W LCB2P40970 561 aa0.52□□□□□ -2.33
PRP42YDR235W YJR030CP47101 745 aa0.52□□□□□ -2.33
PRP42YDR235W ZRG17P53735 605 aa0.52□□□□□ -2.33
PRP42YDR235W INP2Q03824 705 aa0.52□□□□□ -2.33
PRP42YDR235W FAR10Q06001 478 aa0.52□□□□□ -2.33
PRP42YDR235W IPK1Q06667 281 aa0.52□□□□□ -2.33
PRP42YDR235W NOP6Q07623 225 aaKnown RBP0.52□□□□□ -2.33
PRP42YDR235W YDL211CQ12121 372 aa0.52□□□□□ -2.33
PRP42YDR235W SRN2Q99176 213 aa0.52□□□□□ -2.33
PRP42YDR235W DET1Q99288 334 aaKnown RBP0.52□□□□□ -2.33
PRP42YDR235W SCH9P11792 824 aaKnown RBP0.51□□□□□ -2.33
PRP42YDR235W BGL2P15703 313 aaKnown RBP0.51□□□□□ -2.33
PRP42YDR235W CKA2P19454 339 aa0.51□□□□□ -2.33
PRP42YDR235W MNE1P24720 663 aa0.51□□□□□ -2.33
PRP42YDR235W URA10P30402 227 aa0.51□□□□□ -2.33
PRP42YDR235W VMA8P32610 256 aaKnown RBP0.51□□□□□ -2.33
PRP42YDR235W RAD23P32628 398 aaKnown RBP0.51□□□□□ -2.33
PRP42YDR235W UTR5P32630 166 aa0.51□□□□□ -2.33
PRP42YDR235W PXA2P34230 853 aa0.51□□□□□ -2.33
PRP42YDR235W FRM2P37261 193 aa0.51□□□□□ -2.33
PRP42YDR235W BDH1P39714 382 aa0.51□□□□□ -2.33
PRP42YDR235W LYS12P40495 371 aaKnown RBP0.51□□□□□ -2.33
PRP42YDR235W EFM4P40516 257 aa0.51□□□□□ -2.33
PRP42YDR235W UFE1P41834 346 aa0.51□□□□□ -2.33
PRP42YDR235W MOB2P43563 287 aa0.51□□□□□ -2.33
PRP42YDR235W SED5Q01590 340 aa0.51□□□□□ -2.33
PRP42YDR235W YOL075CQ08234 1294 aa0.51□□□□□ -2.33
Retrieved 100 of 5,963 RNA–protein pairs in 59 ms