RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 FAM205CA6NFA0 338 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 SPATA31C2B4DYI2 1134 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 TRAK2O60296 914 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 STAM2O75886 525 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 CSPG5O95196 566 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 OR52Z1P0C646 297 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 CMA1P23946 247 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 CTNNB1P35222 781 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 PRPHP41219 470 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 SETQ01105 290 aaPredicted RBP13.21□□□□□ -0.29
LDLR-212ENST00000560467 PUS10Q3MIT2 529 aaKnown RBP13.21□□□□□ -0.29
LDLR-212ENST00000560467 GNPTABQ3T906 1256 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 EARS2Q5JPH6 523 aaKnown RBP13.21□□□□□ -0.29
LDLR-212ENST00000560467 RUFY4Q6ZNE9 571 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 RPAINQ86UA6 219 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 NLRX1Q86UT6 975 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 ZNF579Q8NAF0 562 aaKnown RBP13.21□□□□□ -0.29
LDLR-212ENST00000560467 RASSF8Q8NHQ8 419 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 MRPS27Q92552 414 aaKnown RBP13.21□□□□□ -0.29
LDLR-212ENST00000560467 CLDND1Q9NY35 253 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 HOOK1Q9UJC3 728 aaKnown RBP13.21□□□□□ -0.29
LDLR-212ENST00000560467 PCDHA7Q9UN72 937 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 SRPRBQ9Y5M8 271 aaKnown RBP13.21□□□□□ -0.29
LDLR-212ENST00000560467 MYO7AQ13402 2215 aa13.21□□□□□ -0.29
LDLR-212ENST00000560467 KIAA1217Q5T5P2 1943 aa13.21□□□□□ -0.3
LDLR-212ENST00000560467 CYP3A7-CYP3A51PA0A087WV96 503 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 TBX3O15119 743 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 GRM6O15303 877 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 DCXO43602 365 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 CHRNA1P02708 482 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 LINC00271P0C7V0 271 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 GHRP10912 638 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 ALADP13716 330 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 CYP3A7P24462 503 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 ICAM3P32942 547 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 LONP1P36776 959 aaKnown RBP13.2□□□□□ -0.3
LDLR-212ENST00000560467 ADAM17P78536 824 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 ATP2C1P98194 919 aaPredicted RBP13.2□□□□□ -0.3
LDLR-212ENST00000560467 NEDD9Q14511 834 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 PTPAQ15257 358 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 CLUL1Q15846 466 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 CEP55Q53EZ4 464 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 PRR16Q569H4 304 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 FAM26DQ5JW98 314 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 PCNX4Q63HM2 1172 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 ALYREFQ86V81 257 aaKnown RBP13.2□□□□□ -0.3
LDLR-212ENST00000560467 ERMNQ8TAM6 284 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 CHAMP1Q96JM3 812 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 CDHR1Q96JP9 859 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 AK8Q96MA6 479 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 FAM20AQ96MK3 541 aa13.2□□□□□ -0.3
LDLR-212ENST00000560467 COL4A6Q14031 1691 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 MICAL3Q7RTP6 2002 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 VWA3AA6NCI4 1184 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 KINO60870 393 aaKnown RBP13.19□□□□□ -0.3
LDLR-212ENST00000560467 LETM1O95202 739 aaPredicted RBP13.19□□□□□ -0.3
LDLR-212ENST00000560467 GNAT1P11488 350 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 CIITAP33076 1130 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 LTBRP36941 435 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 UBA7P41226 1012 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 DLX2Q07687 328 aaPredicted RBP13.19□□□□□ -0.3
LDLR-212ENST00000560467 KLHL40Q2TBA0 621 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 Q4G0T1 1027 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 FIBCD1Q8N539 461 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 FSIP1Q8NA03 581 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 APBB2Q92870 758 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 CCDC39Q9UFE4 941 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 ZNF215Q9UL58 517 aaPredicted RBP13.19□□□□□ -0.3
LDLR-212ENST00000560467 PCDHA12Q9UN75 941 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 MYH6P13533 1939 aa13.19□□□□□ -0.3
LDLR-212ENST00000560467 POTEB3A0JP26 581 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 C19orf67A6NJJ6 358 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 MAFGO15525 162 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 GTF2F1P35269 517 aaKnown RBP eCLIP13.18□□□□□ -0.3
LDLR-212ENST00000560467 TXKP42681 527 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 HYAL1Q12794 435 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 PDIA5Q14554 519 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 LPIN1Q14693 890 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 POTEBQ6S5H4 581 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 NIPA1Q7RTP0 329 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 PLA2G4DQ86XP0 818 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 ADHFE1Q8IWW8 467 aa13.18□□□□□ -0.3
LDLR-212ENST00000560467 C11orf84Q9BUA3 381 aaPredicted RBP13.18□□□□□ -0.3
LDLR-212ENST00000560467 RC3H2Q9HBD1 1191 aaKnown RBP13.18□□□□□ -0.3
LDLR-212ENST00000560467 ADGRA3Q8IWK6 1321 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 C5orf67F2Z3F1 127 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 ADAMTS3O15072 1205 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 TBX10O75333 385 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 TDP2O95551 362 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 MARK3P27448 753 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 IRS1P35568 1242 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 BMPR1AP36894 532 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 FAM160A1Q05DH4 1040 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 MGAT3Q09327 533 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 PPFIA1Q13136 1202 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 MTMR1Q13613 665 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 ZRSR1Q15695 479 aaKnown RBP13.17□□□□□ -0.3
LDLR-212ENST00000560467 CTC1Q2NKJ3 1217 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 KRT79Q5XKE5 535 aa13.17□□□□□ -0.3
LDLR-212ENST00000560467 ZBTB10Q96DT7 871 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms