RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ORC2Q13416 577 aaPredicted RBP10.21□□□□□ -0.78
USP4-202ENST00000351842 KIZQ2M2Z5 673 aa10.21□□□□□ -0.78
USP4-202ENST00000351842 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.21□□□□□ -0.782e-15■■■■■ 372.6
USP4-202ENST00000351842 NRBP2Q9NSY0 501 aa10.21□□□□□ -0.78
USP4-202ENST00000351842 TRMT13Q9NUP7 481 aaKnown RBP10.21□□□□□ -0.78
USP4-202ENST00000351842 MAN1B1Q9UKM7 699 aa10.21□□□□□ -0.78
USP4-202ENST00000351842 TISP43B9A030 160 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 TREHO43280 583 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 DUSP11O75319 330 aaKnown RBP10.2□□□□□ -0.78
USP4-202ENST00000351842 CYP2C9P11712 490 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 TPD52L1Q16890 204 aaPredicted RBP10.2□□□□□ -0.78
USP4-202ENST00000351842 NBPF20Q3BBV1 942 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 XKR3Q5GH77 459 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 EFCAB12Q6NXP0 572 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 RNF180Q86T96 592 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 POLR3FQ9H1D9 316 aaPredicted RBP10.2□□□□□ -0.78
USP4-202ENST00000351842 TUFT1Q9NNX1 390 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 RNF19AQ9NV58 838 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 EYSQ5T1H1 3165 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 BECN2A8MW95 431 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 K7ENM7 598 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 EYA4O95677 639 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 CCDC192P0DO97 292 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 CASP5P51878 434 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 MFSD10Q14728 455 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 EMC2Q15006 297 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 TMEM119Q4V9L6 283 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 BICD1Q96G01 975 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 C16orf70Q9BSU1 422 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 POLR3CQ9BUI4 534 aaPredicted RBP10.2□□□□□ -0.78
USP4-202ENST00000351842 MMRN2Q9H8L6 949 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 CTNND2Q9UQB3 1225 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 INO80B-WBP1J3KQ70 363 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 SLC12A3P55017 1021 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 FAM178BQ8IXR5 827 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 SYCP3Q8IZU3 236 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 LMBR1Q8WVP7 490 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 DNAJB3Q8WWF6 145 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 NLRP7Q8WX94 980 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 GLT1D1Q96MS3 346 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 INO80BQ9C086 356 aaPredicted RBP10.2□□□□□ -0.78
USP4-202ENST00000351842 STARD7Q9NQZ5 370 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 NFASCO94856 1347 aa10.2□□□□□ -0.78
USP4-202ENST00000351842 A0A0C4DFX4 3053 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 CLIC2O15247 247 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 CAPN15O75808 1086 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 SMIM10L2AP0DMW4 78 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 SMIM10L2BP0DMW5 78 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 MYBP10242 640 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 OSTNP61366 133 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 COASYQ13057 564 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 GRIK4Q16099 956 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 GPIHBP1Q8IV16 184 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 AOPEPQ8N6M6 819 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 RNF149Q8NC42 400 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 CCDC47Q96A33 483 aaKnown RBP10.19□□□□□ -0.78
USP4-202ENST00000351842 TCHPQ9BT92 498 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 PRDM5Q9NQX1 630 aaPredicted RBP10.19□□□□□ -0.78
USP4-202ENST00000351842 STK17AQ9UEE5 414 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 TUBE1Q9UJT0 475 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 MGAMO43451 1857 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 KBTBD13C9JR72 458 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 GTPBP6O43824 516 aaPredicted RBP10.19□□□□□ -0.78
USP4-202ENST00000351842 BMP6P22004 513 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 NFX1Q12986 1120 aaKnown RBP10.19□□□□□ -0.78
USP4-202ENST00000351842 SEZ6Q53EL9 994 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 B3GNT9Q6UX72 402 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 MORC4Q8TE76 937 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 ATP8B4Q8TF62 1192 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 U2AF1L4Q8WU68 220 aaKnown RBP10.19□□□□□ -0.78
USP4-202ENST00000351842 PRPF31Q8WWY3 499 aaKnown RBP10.19□□□□□ -0.78
USP4-202ENST00000351842 TRPV6Q9H1D0 765 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 PCIF1Q9H4Z3 704 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 KBTBD4Q9NVX7 518 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 ANKFY1Q9P2R3 1169 aa10.19□□□□□ -0.78
USP4-202ENST00000351842 RBBP6Q7Z6E9 1792 aaKnown RBP10.19□□□□□ -0.78
USP4-202ENST00000351842 CCDC85CA6NKD9 419 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 PSEN2P49810 448 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 ZNF165P49910 485 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 DPYDQ12882 1025 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 IRF5Q13568 498 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 HSP90AA2PQ14568 343 aaPredicted RBP10.18□□□□□ -0.78
USP4-202ENST00000351842 FAM26FQ5R3K3 315 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 CCDC65Q8IXS2 484 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 C4orf19Q8IY42 314 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 SYT2Q8N9I0 419 aaPredicted RBP10.18□□□□□ -0.78
USP4-202ENST00000351842 BSNDQ8WZ55 320 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 KAT2BQ92831 832 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 PPP1R12CQ9BZL4 782 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 MCOLN1Q9GZU1 580 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 TSPY26PQ9H489 355 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 MYO7AQ13402 2215 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 ACLYP53396 1101 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 NLRP11P59045 1033 aaKnown RBP10.18□□□□□ -0.78
USP4-202ENST00000351842 PURAQ00577 322 aaKnown RBP10.18□□□□□ -0.78
USP4-202ENST00000351842 GIT2Q14161 759 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 HIC1Q14526 733 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 KANK3Q6NY19 840 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 RNF169Q8NCN4 708 aa10.18□□□□□ -0.78
USP4-202ENST00000351842 FAM212AQ96EL1 285 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms