RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YPR078CQ06813 372 aa2.9□□□□□ -1.95
UPF3YGR072W SMC5Q08204 1093 aa2.9□□□□□ -1.95
UPF3YGR072W YRM1Q12340 786 aa2.9□□□□□ -1.95
UPF3YGR072W YCL021W-AQ96VH3 125 aa2.9□□□□□ -1.95
UPF3YGR072W RGS2Q99188 309 aa2.9□□□□□ -1.95
UPF3YGR072W NAM2P11325 894 aa2.89□□□□□ -1.95
UPF3YGR072W GAL3P13045 520 aa2.89□□□□□ -1.95
UPF3YGR072W GRR1P24814 1151 aa2.89□□□□□ -1.95
UPF3YGR072W PHA2P32452 334 aa2.89□□□□□ -1.95
UPF3YGR072W SSE1P32589 693 aaKnown RBP2.89□□□□□ -1.95
UPF3YGR072W TOA2P32774 122 aa2.89□□□□□ -1.95
UPF3YGR072W YBL059WP34224 193 aa2.89□□□□□ -1.95
UPF3YGR072W YBR137WP38276 179 aa2.89□□□□□ -1.95
UPF3YGR072W YHR182WP38870 785 aa2.89□□□□□ -1.95
UPF3YGR072W END3P39013 349 aa2.89□□□□□ -1.95
UPF3YGR072W PRP39P39682 629 aaKnown RBP2.89□□□□□ -1.95
UPF3YGR072W YMR134WP40207 237 aa2.89□□□□□ -1.95
UPF3YGR072W HAC1P41546 238 aa2.89□□□□□ -1.95
UPF3YGR072W SEC27P41811 889 aaKnown RBP2.89□□□□□ -1.95
UPF3YGR072W AIM24P47127 394 aa2.89□□□□□ -1.95
UPF3YGR072W PBA1Q05778 276 aa2.89□□□□□ -1.95
UPF3YGR072W YLR297WQ05899 129 aa2.89□□□□□ -1.95
UPF3YGR072W TSR1Q07381 788 aaKnown RBP2.89□□□□□ -1.95
UPF3YGR072W APC5Q08683 685 aa2.89□□□□□ -1.95
UPF3YGR072W YOR012WQ12351 137 aa2.89□□□□□ -1.95
UPF3YGR072W PFK27Q12471 397 aaPredicted RBP2.89□□□□□ -1.95
UPF3YGR072W TRP1P00912 224 aa2.88□□□□□ -1.95
UPF3YGR072W SUP35P05453 685 aaKnown RBP2.88□□□□□ -1.95
UPF3YGR072W RPC40P07703 335 aaKnown RBP2.88□□□□□ -1.95
UPF3YGR072W SPT15P13393 240 aaKnown RBP2.88□□□□□ -1.95
UPF3YGR072W CKI1P20485 582 aa2.88□□□□□ -1.95
UPF3YGR072W ARO2P28777 376 aaKnown RBP2.88□□□□□ -1.95
UPF3YGR072W DEG1P31115 442 aaKnown RBP2.88□□□□□ -1.95
UPF3YGR072W VAM7P32912 316 aa2.88□□□□□ -1.95
UPF3YGR072W GPX2P38143 162 aa2.88□□□□□ -1.95
UPF3YGR072W YHK8P38776 514 aa2.88□□□□□ -1.95
UPF3YGR072W SBE22P38814 852 aa2.88□□□□□ -1.95
UPF3YGR072W NDT80P38830 627 aa2.88□□□□□ -1.95
UPF3YGR072W PTH1P38876 190 aaKnown RBP2.88□□□□□ -1.95
UPF3YGR072W YIL067CP40514 678 aa2.88□□□□□ -1.95
UPF3YGR072W YFR018CP43599 363 aa2.88□□□□□ -1.95
UPF3YGR072W TOS2P50078 622 aa2.88□□□□□ -1.95
UPF3YGR072W CWC22P53333 577 aaKnown RBP2.88□□□□□ -1.95
UPF3YGR072W SMP3Q04174 516 aa2.88□□□□□ -1.95
UPF3YGR072W YOR387CQ08910 206 aa2.88□□□□□ -1.95
UPF3YGR072W YDR262WQ12331 272 aa2.88□□□□□ -1.95
UPF3YGR072W PCL9Q12477 304 aa2.88□□□□□ -1.95
UPF3YGR072W VPS63O13549 108 aa2.87□□□□□ -1.95
UPF3YGR072W ARF2P19146 181 aaKnown RBP2.87□□□□□ -1.95
UPF3YGR072W DAL2P25335 343 aa2.87□□□□□ -1.95
UPF3YGR072W POP5P28005 173 aa2.87□□□□□ -1.95
UPF3YGR072W PCH2P38126 564 aa2.87□□□□□ -1.95
UPF3YGR072W ECM8P38246 354 aa2.87□□□□□ -1.95
UPF3YGR072W RTC2P38279 296 aa2.87□□□□□ -1.95
UPF3YGR072W MNN9P39107 395 aaKnown RBP2.87□□□□□ -1.95
UPF3YGR072W RBG1P39729 369 aa2.87□□□□□ -1.95
UPF3YGR072W MTM1P53320 366 aa2.87□□□□□ -1.95
UPF3YGR072W EGD1Q02642 157 aaKnown RBP2.87□□□□□ -1.95
UPF3YGR072W YGK3Q12222 375 aaPredicted RBP2.87□□□□□ -1.95
UPF3YGR072W AIM45Q12480 344 aaKnown RBP2.87□□□□□ -1.95
UPF3YGR072W YER078W-AQ3E7A2 54 aa2.87□□□□□ -1.95
UPF3YGR072W YCR024C-BQ3E7Z8 88 aa2.87□□□□□ -1.95
UPF3YGR072W SAR1P20606 190 aaKnown RBP2.86□□□□□ -1.95
UPF3YGR072W VMA5P31412 392 aaKnown RBP2.86□□□□□ -1.95
UPF3YGR072W DPH5P32469 300 aaPredicted RBP2.86□□□□□ -1.95
UPF3YGR072W MRPL40P36534 297 aa2.86□□□□□ -1.95
UPF3YGR072W MEP1P40260 492 aa2.86□□□□□ -1.95
UPF3YGR072W LCB3P47013 409 aa2.86□□□□□ -1.95
UPF3YGR072W CLD1P53264 445 aa2.86□□□□□ -1.95
UPF3YGR072W ABZ2Q03266 374 aa2.86□□□□□ -1.95
UPF3YGR072W NAT4Q04751 285 aa2.86□□□□□ -1.95
UPF3YGR072W RTN1Q04947 295 aaKnown RBP2.86□□□□□ -1.95
UPF3YGR072W MRPL35Q06678 367 aa2.86□□□□□ -1.95
UPF3YGR072W BSC6Q08280 497 aa2.86□□□□□ -1.95
UPF3YGR072W HMS1Q12398 434 aa2.86□□□□□ -1.95
UPF3YGR072W CYC3P06182 269 aa2.85□□□□□ -1.95
UPF3YGR072W PET123P17558 318 aa2.85□□□□□ -1.95
UPF3YGR072W RPB5P20434 215 aa2.85□□□□□ -1.95
UPF3YGR072W MXR2P25566 168 aa2.85□□□□□ -1.95
UPF3YGR072W CIN8P27895 1000 aa2.85□□□□□ -1.95
UPF3YGR072W KAR9P32526 644 aa2.85□□□□□ -1.95
UPF3YGR072W MRPS5P33759 307 aa2.85□□□□□ -1.95
UPF3YGR072W RTT105P40063 208 aa2.85□□□□□ -1.95
UPF3YGR072W BTT1P40314 149 aaPredicted RBP2.85□□□□□ -1.95
UPF3YGR072W AIM20P40451 204 aa2.85□□□□□ -1.95
UPF3YGR072W YFR057WP43625 151 aa2.85□□□□□ -1.95
UPF3YGR072W AIP1P46680 615 aaKnown RBP2.85□□□□□ -1.95
UPF3YGR072W TRF5P48561 642 aaKnown RBP2.85□□□□□ -1.95
UPF3YGR072W LST7P53237 242 aa2.85□□□□□ -1.95
UPF3YGR072W VOA1P53262 265 aa2.85□□□□□ -1.95
UPF3YGR072W BOR1P53838 576 aa2.85□□□□□ -1.95
UPF3YGR072W ERV25P54837 211 aaKnown RBP2.85□□□□□ -1.95
UPF3YGR072W ELP3Q02908 557 aaKnown RBP2.85□□□□□ -1.95
UPF3YGR072W CAB5Q03941 241 aa2.85□□□□□ -1.95
UPF3YGR072W MSC3Q05812 728 aa2.85□□□□□ -1.95
UPF3YGR072W HRI1Q05905 244 aaKnown RBP2.85□□□□□ -1.95
UPF3YGR072W BUR2Q05949 395 aa2.85□□□□□ -1.95
UPF3YGR072W YPR091CQ06833 770 aa2.85□□□□□ -1.95
UPF3YGR072W YDL114WQ07530 308 aa2.85□□□□□ -1.95
UPF3YGR072W IRC25Q07951 179 aa2.85□□□□□ -1.95
Retrieved 100 of 5,963 RNA–protein pairs in 114.9 ms