RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	RBK1	P25332	333 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	CHA1	P25379	360 aa	Known RBP	4.36	□□□□□ -1.71
KIN28	YDL108W	PTC6	P25646	442 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.36	□□□□□ -1.71	not detected
KIN28	YDL108W	ERG9	P29704	444 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	YPS1	P32329	569 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	RIM1	P32445	135 aa	Known RBP	4.36	□□□□□ -1.71
KIN28	YDL108W	TCA17	P32613	152 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	TCD2	P36101	447 aa	Known RBP	4.36	□□□□□ -1.71
KIN28	YDL108W	DRE2	P36152	348 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	IML3	P38265	245 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	FZO1	P38297	855 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	URA8	P38627	578 aa	Predicted RBP	4.36	□□□□□ -1.71
KIN28	YDL108W	TRM5	P38793	499 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	CYC2	P38909	366 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	CCT2	P39076	527 aa	Known RBP	4.36	□□□□□ -1.71
KIN28	YDL108W	YER121W	P40076	114 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	UFE1	P41834	346 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	CTK2	P46962	323 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	GET1	P53192	235 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	SPP2	Q02521	185 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	YDC1	Q02896	317 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	IRC4	Q03036	179 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	SNU56	Q03782	492 aa	Known RBP	4.36	□□□□□ -1.71
KIN28	YDL108W	YDR248C	Q03786	193 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	UBX2	Q04228	584 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	YMR310C	Q04867	317 aa	Predicted RBP	4.36	□□□□□ -1.71
KIN28	YDL108W	SLF1	Q12034	447 aa	Known RBP	4.36	□□□□□ -1.71
KIN28	YDL108W	DAS2	Q12084	232 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	PET20	Q99373	253 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	RAD50	P12753	1312 aa		4.36	□□□□□ -1.71
KIN28	YDL108W	ARD1	P07347	238 aa	Predicted RBP	4.35	□□□□□ -1.71
KIN28	YDL108W	CLN3	P13365	580 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	URE2	P23202	354 aa	Known RBP	4.35	□□□□□ -1.71
KIN28	YDL108W	HSP30	P25619	332 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	CAM1	P29547	415 aa	Known RBP	4.35	□□□□□ -1.71
KIN28	YDL108W	GSH1	P32477	678 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	PRP21	P32524	280 aa	Predicted RBP	4.35	□□□□□ -1.71
KIN28	YDL108W	LOS1	P33418	1100 aa	Predicted RBP	4.35	□□□□□ -1.71
KIN28	YDL108W	WBP1	P33767	430 aa	Known RBP	4.35	□□□□□ -1.71
KIN28	YDL108W	BIG1	P38813	335 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	FET3	P38993	636 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	CCT6	P39079	546 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	RPN11	P43588	306 aa	Known RBP	4.35	□□□□□ -1.71
KIN28	YDL108W	COS5	P47187	383 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	MSY1	P48527	492 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	IMD4	P50094	524 aa	Known RBP	4.35	□□□□□ -1.71
KIN28	YDL108W	YGL235W	P53071	178 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	NOP19	P53317	196 aa	Predicted RBP	4.35	□□□□□ -1.71
KIN28	YDL108W	YIP3	P53633	176 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	MMT1	Q03218	510 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	YML108W	Q03759	105 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	ARO80	Q04052	950 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	CDC123	Q05791	360 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	NDE2	Q07500	545 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	COS7	Q07788	383 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	NSE1	Q07913	336 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	YPL272C	Q08984	517 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	ATG9	Q12142	997 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	RLM1	Q12224	676 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	SNF8	Q12483	233 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	YLR111W	Q12528	110 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	SNT2	P53127	1403 aa		4.35	□□□□□ -1.71
KIN28	YDL108W	PGK1	P00560	416 aa	Known RBP	4.34	□□□□□ -1.71
KIN28	YDL108W	CAR1	P00812	333 aa	Known RBP	4.34	□□□□□ -1.71
KIN28	YDL108W	ATP6	P00854	259 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	SPT3	P06844	337 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	RPS28B	P0C0X0	67 aa	Known RBP	4.34	□□□□□ -1.71
KIN28	YDL108W	YMR085W	P0CF18	432 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	DBF2	P22204	572 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	MBR1	P23493	339 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	HXT2	P23585	541 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	VMA16	P23968	213 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	MSS51	P32335	436 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	SEC66	P33754	206 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	MNN2	P38069	597 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	IRC7	P43623	340 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	MRX5	P47007	382 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	ASN2	P49090	572 aa	Known RBP	4.34	□□□□□ -1.71
KIN28	YDL108W	YGL036W	P53185	909 aa	Predicted RBP	4.34	□□□□□ -1.71
KIN28	YDL108W	RCF2	P53721	224 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	RIM13	Q03792	727 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	SYO1	Q07395	620 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	RFU1	Q08003	200 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.71	not detected
KIN28	YDL108W	PKH2	Q12236	1081 aa	Known RBP	4.34	□□□□□ -1.71
KIN28	YDL108W	PAA1	Q12447	191 aa	Known RBP	4.34	□□□□□ -1.71
KIN28	YDL108W	RPS28A	Q3E7X9	67 aa	Predicted RBP	4.34	□□□□□ -1.71
KIN28	YDL108W	UBA3	Q99344	299 aa		4.34	□□□□□ -1.71
KIN28	YDL108W	SPA2	P23201	1466 aa	Known RBP	4.33	□□□□□ -1.72
KIN28	YDL108W	MAS1	P10507	462 aa		4.33	□□□□□ -1.72
KIN28	YDL108W	MRP1	P10662	321 aa	Known RBP	4.33	□□□□□ -1.72
KIN28	YDL108W	NHP6A	P11632	93 aa	Known RBP	4.33	□□□□□ -1.72
KIN28	YDL108W	PMR1	P13586	950 aa		4.33	□□□□□ -1.72
KIN28	YDL108W	DAL82	P21705	255 aa		4.33	□□□□□ -1.72
KIN28	YDL108W	SNT1	P25357	1226 aa		4.33	□□□□□ -1.72
KIN28	YDL108W	DEG1	P31115	442 aa	Known RBP	4.33	□□□□□ -1.72
KIN28	YDL108W	FRE1	P32791	686 aa		4.33	□□□□□ -1.72
KIN28	YDL108W	MCH2	P36032	473 aa		4.33	□□□□□ -1.72
KIN28	YDL108W	RTC2	P38279	296 aa		4.33	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 85.7 ms