RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W SNP1Q00916 300 aaPredicted RBP13.04□□□□□ -0.32
DEP1YAL013W YSA1Q01976 231 aa13.04□□□□□ -0.32
DEP1YAL013W MMP1Q12372 583 aa13.04□□□□□ -0.32
DEP1YAL013W TRM10Q12400 293 aa13.04□□□□□ -0.32
DEP1YAL013W VMA6P32366 345 aaKnown RBP13.03□□□□□ -0.32
DEP1YAL013W SRO77P38163 1010 aa13.03□□□□□ -0.32
DEP1YAL013W SSZ1P38788 538 aaKnown RBP13.03□□□□□ -0.32
DEP1YAL013W KRE29P40026 464 aa13.03□□□□□ -0.32
DEP1YAL013W SOK1P40317 901 aa13.03□□□□□ -0.32
DEP1YAL013W DUG1P43616 481 aaKnown RBP13.03□□□□□ -0.32
DEP1YAL013W TRM9P49957 279 aa13.03□□□□□ -0.32
DEP1YAL013W YPR015CQ12531 247 aa13.03□□□□□ -0.32
DEP1YAL013W FAA1P30624 700 aaKnown RBP13.02□□□□□ -0.33
DEP1YAL013W RIX1P38883 763 aaPredicted RBP13.02□□□□□ -0.33
DEP1YAL013W RRG9P40156 214 aa13.02□□□□□ -0.33
DEP1YAL013W JHD2P47156 728 aaPredicted RBP13.02□□□□□ -0.33
DEP1YAL013W EXG2P52911 562 aa13.02□□□□□ -0.33
DEP1YAL013W RNH1Q04740 348 aa13.02□□□□□ -0.33
DEP1YAL013W NBA1Q08229 501 aaKnown RBP13.02□□□□□ -0.33
DEP1YAL013W VCX1Q99385 411 aa13.02□□□□□ -0.33
DEP1YAL013W BAR1P12630 587 aa13.01□□□□□ -0.33
DEP1YAL013W PBN1P25580 416 aa13.01□□□□□ -0.33
DEP1YAL013W ITR2P30606 609 aa13.01□□□□□ -0.33
DEP1YAL013W MKK2P32491 506 aa13.01□□□□□ -0.33
DEP1YAL013W TOD6P34219 525 aa13.01□□□□□ -0.33
DEP1YAL013W VPS51P36116 164 aa13.01□□□□□ -0.33
DEP1YAL013W APE4P38821 490 aa13.01□□□□□ -0.33
DEP1YAL013W PAC1P39946 494 aaKnown RBP13.01□□□□□ -0.33
DEP1YAL013W SMK1P41808 388 aa13.01□□□□□ -0.33
DEP1YAL013W CHA4P43634 648 aa13.01□□□□□ -0.33
DEP1YAL013W YPL068CQ02749 293 aa13.01□□□□□ -0.33
DEP1YAL013W ABZ2Q03266 374 aa13.01□□□□□ -0.33
DEP1YAL013W YMD8Q03697 442 aa13.01□□□□□ -0.33
DEP1YAL013W YOR214CQ12282 236 aa13.01□□□□□ -0.33
DEP1YAL013W SEN1Q00416 2231 aaKnown RBP13□□□□□ -0.33
DEP1YAL013W BUD5P25300 642 aaPredicted RBP13□□□□□ -0.33
DEP1YAL013W DCG1P32460 244 aa13□□□□□ -0.33
DEP1YAL013W YHR219WP38900 624 aa13□□□□□ -0.33
DEP1YAL013W YNL195CP40168 261 aa13□□□□□ -0.33
DEP1YAL013W GRX5Q02784 150 aa13□□□□□ -0.33
DEP1YAL013W YMR210WQ03649 449 aa13□□□□□ -0.33
DEP1YAL013W CRT10Q08226 957 aa13□□□□□ -0.33
DEP1YAL013W BRR2P32639 2163 aaKnown RBP13□□□□□ -0.33
DEP1YAL013W CAR2P07991 424 aaKnown RBP12.99□□□□□ -0.33
DEP1YAL013W HIR2P32480 875 aa12.99□□□□□ -0.33
DEP1YAL013W ECM34P38728 170 aa12.99□□□□□ -0.33
DEP1YAL013W PEX18P38855 283 aa12.99□□□□□ -0.33
DEP1YAL013W UME6P39001 836 aa12.99□□□□□ -0.33
DEP1YAL013W SWP82P43554 623 aa12.99□□□□□ -0.33
DEP1YAL013W BAT2P47176 376 aaKnown RBP12.99□□□□□ -0.33
DEP1YAL013W AI1P03875 834 aa12.98□□□□□ -0.33
DEP1YAL013W MET17P06106 444 aa12.98□□□□□ -0.33
DEP1YAL013W SAM35P14693 329 aa12.98□□□□□ -0.33
DEP1YAL013W GPI12P23797 304 aa12.98□□□□□ -0.33
DEP1YAL013W HBS1P32769 611 aaKnown RBP12.98□□□□□ -0.33
DEP1YAL013W ECM15P35195 104 aa12.98□□□□□ -0.33
DEP1YAL013W MBP1P39678 833 aa12.98□□□□□ -0.33
DEP1YAL013W APS3P47064 194 aa12.98□□□□□ -0.33
DEP1YAL013W INP1Q03694 420 aa12.98□□□□□ -0.33
DEP1YAL013W TPP1Q03796 238 aa12.98□□□□□ -0.33
DEP1YAL013W YLR446WQ06204 433 aa12.98□□□□□ -0.33
DEP1YAL013W SIA1Q12212 622 aa12.98□□□□□ -0.33
DEP1YAL013W YGK3Q12222 375 aaPredicted RBP12.98□□□□□ -0.33
DEP1YAL013W RPL20AP0CX23 172 aaKnown RBP12.97□□□□□ -0.33
DEP1YAL013W RPL20BP0CX24 172 aaPredicted RBP12.97□□□□□ -0.33
DEP1YAL013W DAL82P21705 255 aa12.97□□□□□ -0.33
DEP1YAL013W YCR100CP25606 316 aa12.97□□□□□ -0.33
DEP1YAL013W MAE1P36013 669 aaKnown RBP12.97□□□□□ -0.33
DEP1YAL013W BAP2P38084 609 aa12.97□□□□□ -0.33
DEP1YAL013W OCA5P38738 679 aa12.97□□□□□ -0.33
DEP1YAL013W SBE22P38814 852 aa12.97□□□□□ -0.33
DEP1YAL013W YHR210CP38893 341 aa12.97□□□□□ -0.33
DEP1YAL013W FAA3P39002 694 aa12.97□□□□□ -0.33
DEP1YAL013W VPS52P39904 641 aa12.97□□□□□ -0.33
DEP1YAL013W IES5P40060 125 aa12.97□□□□□ -0.33
DEP1YAL013W SPT20P50875 604 aa12.97□□□□□ -0.33
DEP1YAL013W DBP6P53734 629 aaKnown RBP12.97□□□□□ -0.33
DEP1YAL013W EMG1Q06287 252 aaKnown RBP12.97□□□□□ -0.33
DEP1YAL013W ARV1Q06541 321 aa12.97□□□□□ -0.33
DEP1YAL013W SKI7Q08491 747 aaPredicted RBP12.97□□□□□ -0.33
DEP1YAL013W YIL046W-AQ3E7Z4 54 aa12.97□□□□□ -0.33
DEP1YAL013W HOM3P10869 527 aa12.96□□□□□ -0.33
DEP1YAL013W SAC7P17121 654 aa12.96□□□□□ -0.33
DEP1YAL013W OAC1P32332 324 aa12.96□□□□□ -0.33
DEP1YAL013W ECM4P36156 370 aa12.96□□□□□ -0.33
DEP1YAL013W SEA4P38164 1038 aa12.96□□□□□ -0.33
DEP1YAL013W RET2P43621 546 aa12.96□□□□□ -0.33
DEP1YAL013W LCL3P53153 274 aa12.96□□□□□ -0.33
DEP1YAL013W YGR067CP53243 804 aa12.96□□□□□ -0.33
DEP1YAL013W RBG2P53295 368 aaKnown RBP12.96□□□□□ -0.33
DEP1YAL013W URC2Q04411 772 aa12.96□□□□□ -0.33
DEP1YAL013W SEC13Q04491 297 aaKnown RBP12.96□□□□□ -0.33
DEP1YAL013W ARP10Q04549 284 aa12.96□□□□□ -0.33
DEP1YAL013W YOL162WP0CF19 215 aa12.95□□□□□ -0.34
DEP1YAL013W ENA1P13587 1091 aa12.95□□□□□ -0.34
DEP1YAL013W RPS5P26783 225 aaKnown RBP12.95□□□□□ -0.34
DEP1YAL013W PMT2P31382 759 aa12.95□□□□□ -0.34
DEP1YAL013W QRI7P43122 407 aa12.95□□□□□ -0.34
DEP1YAL013W ALR2P43553 858 aa12.95□□□□□ -0.34
DEP1YAL013W YAT1P80235 687 aa12.95□□□□□ -0.34
Retrieved 100 of 5,963 RNA–protein pairs in 104.2 ms