RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 BICD2Q8TD16 824 aa6.43□□□□□ -1.38
CPNE3-208ENST00000614678 MTMR10Q9NXD2 777 aa6.43□□□□□ -1.38
CPNE3-208ENST00000614678 PCDHA10Q9Y5I2 948 aa6.43□□□□□ -1.38
CPNE3-208ENST00000614678 MEIS3P2A8K0S8 358 aa6.43□□□□□ -1.38
CPNE3-208ENST00000614678 C4orf32Q8N8J7 132 aa6.43□□□□□ -1.38
CPNE3-208ENST00000614678 TMX1Q9H3N1 280 aa6.43□□□□□ -1.38
CPNE3-208ENST00000614678 AZI2Q9H6S1 392 aa6.43□□□□□ -1.38
CPNE3-208ENST00000614678 TTC12Q9H892 705 aaPredicted RBP6.43□□□□□ -1.38
CPNE3-208ENST00000614678 IGSF9BQ9UPX0 1349 aa6.43□□□□□ -1.38
CPNE3-208ENST00000614678 CEBPZQ03701 1054 aaKnown RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 SPECC1Q5M775 1068 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 MIER3Q7Z3K6 550 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 KRT25Q7Z3Z0 450 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 FAM184AQ8NB25 1140 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 TMEM143Q96AN5 459 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 CDHR1Q96JP9 859 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 MTMR9Q96QG7 549 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 KATNAL1Q9BW62 490 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 SEMA6BQ9H3T3 888 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 GPRC5CQ9NQ84 441 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 SEPT9Q9UHD8 586 aaPredicted RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 ZNF215Q9UL58 517 aaPredicted RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 NRCAMQ92823 1304 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 PITPNM1O00562 1244 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 MAFGO15525 162 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 KPNA6O60684 536 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 MED24O75448 989 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 SLITRK3O94933 977 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 PPIGQ13427 754 aaKnown RBP eCLIP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 CCDC85BQ15834 202 aaPredicted RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 CDR2LQ86X02 465 aaPredicted RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 TPH2Q8IWU9 490 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 ATP8B4Q8TF62 1192 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 HERVK_113Q902F9 699 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 CDX2Q99626 313 aaPredicted RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 TEKT3Q9BXF9 490 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 MAF1Q9H063 256 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 NOC2LQ9Y3T9 749 aaKnown RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 TTLL13PA6NNM8 815 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 SPATA31C1P0DKV0 1188 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 PRKCSHP14314 528 aaPredicted RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 ATP2A2P16615 1042 aaKnown RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 NFX1Q12986 1120 aaKnown RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 EFCAB12Q6NXP0 572 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 POTEGQ6S5H5 508 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 USP49Q70CQ1 688 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 NIPA1Q7RTP0 329 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 KCNK18Q7Z418 384 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 TMEM130Q8N3G9 435 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 RETREG2Q8NC44 543 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 MINDY3Q9H8M7 445 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 EHMT1Q9H9B1 1298 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 COL4A6Q14031 1691 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 ST18O60284 1047 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 PBX3P40426 434 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 AFF1P51825 1210 aaKnown RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 SETQ01105 290 aaPredicted RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 ZNF746Q6NUN9 644 aaPredicted RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 MIS18BP1Q6P0N0 1132 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 PLPPR4Q7Z2D5 763 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 NOSTRINQ8IVI9 506 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 AFAP1L1Q8TED9 768 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 LXNQ9BS40 222 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 IFIH1Q9BYX4 1025 aaKnown RBP6.42□□□□□ -1.38
CPNE3-208ENST00000614678 TBC1D22BQ9NU19 505 aa6.42□□□□□ -1.38
CPNE3-208ENST00000614678 DDX11L8A8MPP1 907 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 WDR64B1ANS9 1081 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 GPR32O75388 356 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 OATP04181 439 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 NLRP11P59045 1033 aaKnown RBP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 CALCRLQ16602 461 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 TPRNQ4KMQ1 711 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 PLEKHG4Q58EX7 1191 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 FBXO47Q5MNV8 452 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 PPP4R3AQ6IN85 833 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 C17orf80Q9BSJ5 609 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 CXCL16Q9H2A7 254 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 ZNF576Q9H609 170 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 SLC4A7Q9Y6M7 1214 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 BDP1A6H8Y1 2624 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 NEMFO60524 1076 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 SLC34A2O95436 690 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 CXCL10P02778 98 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 PSAPP07602 524 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 PTGDRQ13258 359 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 TARBP2Q15633 366 aaKnown RBP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 ZRSR1Q15695 479 aaKnown RBP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 GIMAP8Q8ND71 665 aaPredicted RBP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 FEZF2Q8TBJ5 459 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 EIF2AK1Q9BQI3 630 aaKnown RBP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 UPF2Q9HAU5 1272 aaKnown RBP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 PADI3Q9ULW8 664 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 PCDHGC5Q9Y5F6 944 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 TTC3P53804 2025 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 VPS37CA5D8V6 355 aaPredicted RBP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 EDN1P05305 212 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 U2AF2P26368 475 aaKnown RBP eCLIP6.41□□□□□ -1.38
CPNE3-208ENST00000614678 KRT76Q01546 638 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 RAD51AP2Q09MP3 1159 aa6.41□□□□□ -1.38
CPNE3-208ENST00000614678 BFSP2Q13515 415 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms