RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.97■■□□□ 1.11
UPF1-207ENST00000599848 TSSK1BQ9BXA7 367 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 RABEP2Q9H5N1 569 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 LRRD1A4D1F6 860 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 DDIT3P35638 169 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 ITPRIPL1Q6GPH6 555 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 ZNF445P59923 1031 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 SPOPLQ6IQ16 392 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 AFG1LQ8WV93 481 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 ARHGEF1Q92888 912 aaKnown RBP21.97■■□□□ 1.11
UPF1-207ENST00000599848 HECW2Q9P2P5 1572 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 DNAJC8O75937 253 aaPredicted RBP21.97■■□□□ 1.11
UPF1-207ENST00000599848 TUBB6Q9BUF5 446 aa21.97■■□□□ 1.11
UPF1-207ENST00000599848 GNGT2O14610 69 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 ZNF197O14709 1029 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 ANKRD20A4Q4UJ75 823 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 ANKRD20A8PQ5CZ79 823 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 ANKRD20A2Q5SQ80 823 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 ANKRD20A1Q5TYW2 823 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 FBXW4P57775 412 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 DAAM1Q9Y4D1 1078 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 CRB1P82279 1406 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 QARSP47897 775 aaKnown RBP21.96■■□□□ 1.11
UPF1-207ENST00000599848 SLMAPQ14BN4 828 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 PDIK1LQ8N165 341 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 DYNLL2Q96FJ2 89 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 OSBPL3Q9H4L5 887 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 RWDD2AQ9UIY3 292 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 MINPP1Q9UNW1 487 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 BUB1O43683 1085 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 SEMA3FQ13275 785 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 COG2Q14746 738 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 MEI1Q5TIA1 1274 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 XXYLT1Q8NBI6 393 aa21.96■■□□□ 1.11
UPF1-207ENST00000599848 EFCAB8A8MWE9 144 aa21.95■■□□□ 1.11
UPF1-207ENST00000599848 MAGEB2O15479 319 aa21.95■■□□□ 1.11
UPF1-207ENST00000599848 ENOSF1Q7L5Y1 443 aa21.95■■□□□ 1.11
UPF1-207ENST00000599848 FCGRTP55899 365 aa21.95■■□□□ 1.1
UPF1-207ENST00000599848 STILQ15468 1287 aa21.95■■□□□ 1.1
UPF1-207ENST00000599848 TBCCQ15814 346 aa21.95■■□□□ 1.1
UPF1-207ENST00000599848 MRFAP1L1Q96HT8 127 aa21.95■■□□□ 1.1
UPF1-207ENST00000599848 FAM96AQ9H5X1 160 aa21.95■■□□□ 1.1
UPF1-207ENST00000599848 A2ML1A8K2U0 1454 aa21.95■■□□□ 1.1
UPF1-207ENST00000599848 PGRMC1O00264 195 aaKnown RBP21.95■■□□□ 1.1
UPF1-207ENST00000599848 PSMA2P25787 234 aa21.95■■□□□ 1.1
UPF1-207ENST00000599848 STRIP1Q5VSL9 837 aa21.95■■□□□ 1.1
UPF1-207ENST00000599848 FSD1LQ9BXM9 530 aa21.95■■□□□ 1.1
UPF1-207ENST00000599848 BASP1P80723 227 aaKnown RBP21.95■■□□□ 1.1
UPF1-207ENST00000599848 ESRRBO95718 433 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 CASP2P42575 452 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 GTF2H3Q13889 308 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 HAUS6Q7Z4H7 955 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 SNX19Q92543 992 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 SUN2Q9UH99 717 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 SNX2O60749 519 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 HOXA13P31271 388 aaPredicted RBP21.94■■□□□ 1.1
UPF1-207ENST00000599848 RFC1P35251 1148 aaPredicted RBP21.94■■□□□ 1.1
UPF1-207ENST00000599848 ARL4DP49703 201 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 ANKS3Q6ZW76 656 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 FBXL13Q8NEE6 735 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 FOPNLQ96NB1 174 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 PPP1R16BQ96T49 567 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 DPH5Q9H2P9 285 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 TJP3O95049 919 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 SERPING1P05155 500 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 RARBP10826 455 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 PROSER3Q2NL68 480 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 CYP26B1Q9NR63 512 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 CDK12Q9NYV4 1490 aaPredicted RBP21.94■■□□□ 1.1
UPF1-207ENST00000599848 CLIC2O15247 247 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 SKIP12755 728 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 UBE2Q2Q8WVN8 375 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 BHMT2Q9H2M3 363 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 KDM6BO15054 1643 aa21.94■■□□□ 1.1
UPF1-207ENST00000599848 MEIS1O00470 390 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 STAG3L1P0CL83 205 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 NAA25Q14CX7 972 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 PADI6Q6TGC4 694 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 LZICQ8WZA0 190 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 NGRNQ9NPE2 291 aaKnown RBP21.93■■□□□ 1.1
UPF1-207ENST00000599848 AP3B1O00203 1094 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 RASGRF2O14827 1237 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 ENTPD3O75355 529 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 GH1P01241 217 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 UBE2SQ16763 222 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 TBC1D9BQ66K14 1250 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 SCARA5Q6ZMJ2 495 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 MGARPQ8TDB4 240 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 SLC38A7Q9NVC3 462 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 MAP3K4Q9Y6R4 1608 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 ADKP55263 362 aaKnown RBP21.93■■□□□ 1.1
UPF1-207ENST00000599848 SCRN1Q12765 414 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 TRIM67Q6ZTA4 783 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 PROM2Q8N271 834 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 PDZD8Q8NEN9 1154 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 TEX13BQ9BXU2 312 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 DPP7Q9UHL4 492 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 BUB1BO60566 1050 aaPredicted RBP21.93■■□□□ 1.1
UPF1-207ENST00000599848 MT-ND3P03897 115 aa21.93■■□□□ 1.1
UPF1-207ENST00000599848 SDC4P31431 198 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms