RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 SPIRE1Q08AE8 756 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 MTMR1Q13613 665 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 SNX17Q15036 470 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 PWP2Q15269 919 aaKnown RBP9.92□□□□□ -0.82
VPS39-207ENST00000563692 KCNA10Q16322 511 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 ECM1Q16610 540 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 COBLL1Q53SF7 1204 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 GNASQ5JWF2 1037 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 C1orf53Q5VUE5 145 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 DYMQ7RTS9 669 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 VSIG10LQ86VR7 867 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 SYT2Q8N9I0 419 aaPredicted RBP9.92□□□□□ -0.82
VPS39-207ENST00000563692 DDX12PQ92771 950 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 FGD4Q96M96 766 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 UIMC1Q96RL1 719 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 IWS1Q96ST2 819 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 HSD17B14Q9BPX1 270 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 PDCD2LQ9BRP1 358 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 XPO4Q9C0E2 1151 aaKnown RBP9.92□□□□□ -0.82
VPS39-207ENST00000563692 AP5M1Q9H0R1 490 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 VTA1Q9NP79 307 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 KCNH7Q9NS40 1196 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 COL20A1Q9P218 1284 aa9.92□□□□□ -0.82
VPS39-207ENST00000563692 MROH7Q68CQ1 1323 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 POTEB3A0JP26 581 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 DCDC2CA8MYV0 355 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 NRDCO43847 1150 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 SLITRK3O94933 977 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 EYA4O95677 639 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 TPM2P07951 284 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 NR3C2P08235 984 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 SPATA31C1P0DKV0 1188 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 CD44P16070 742 aaKnown RBP9.91□□□□□ -0.82
VPS39-207ENST00000563692 ACLYP53396 1101 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 STX17P56962 302 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 GSDMDP57764 484 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 GJA9P57773 515 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 TLE2Q04725 743 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 GNPTABQ3T906 1256 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 IQSEC1Q6DN90 963 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 POTEBQ6S5H4 581 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 SLC30A10Q6XR72 485 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 EEPD1Q7L9B9 569 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 CCDC186Q7Z3E2 898 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 MIER3Q7Z3K6 550 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 TLK2Q86UE8 772 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 GPBP1Q86WP2 473 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 FAM114A1Q8IWE2 563 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 TPH2Q8IWU9 490 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 SMYD4Q8IYR2 804 aaPredicted RBP9.91□□□□□ -0.82
VPS39-207ENST00000563692 KLHDC9Q8NEP7 349 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 DNERQ8NFT8 737 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 GPRASP2Q96D09 838 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 AGO4Q9HCK5 861 aaKnown RBP9.91□□□□□ -0.82
VPS39-207ENST00000563692 PANK4Q9NVE7 773 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 MAGEC2Q9UBF1 373 aaPredicted RBP9.91□□□□□ -0.82
VPS39-207ENST00000563692 CTNND2Q9UQB3 1225 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 ZKSCAN5Q9Y2L8 839 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 GDAQ9Y2T3 454 aa9.91□□□□□ -0.82
VPS39-207ENST00000563692 MYH7BA7E2Y1 1941 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 ZNFX1Q9P2E3 1918 aaKnown RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 EML1O00423 815 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 CHMP2AO43633 222 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 DKC1O60832 514 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS39-207ENST00000563692 CABYRO75952 493 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 P4HBP07237 508 aaKnown RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 CLTBP09497 229 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 ATP1A3P13637 1013 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 ZNF18P17022 549 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 CCNE1P24864 410 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 SFNP31947 248 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 ALDH5A1P51649 535 aaPredicted RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 JAK3P52333 1124 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 SLC12A3P55017 1021 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 MRPS9P82933 396 aaKnown RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 KRT76Q01546 638 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 STXBP2Q15833 593 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 FSCN1Q16658 493 aaKnown RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 BRDTQ58F21 947 aaPredicted RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 HERC4Q5GLZ8 1057 aaPredicted RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 POTEGQ6S5H5 508 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 KCNK18Q7Z418 384 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 FBXO16Q8IX29 292 aaPredicted RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 LRRC15Q8TF66 581 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 P2RX5Q93086 422 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 DYDC2Q96IM9 177 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 TSG101Q99816 390 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 UPF3AQ9H1J1 476 aaKnown RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 HSD3B7Q9H2F3 369 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 UNC45AQ9H3U1 944 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 ZSWIM4Q9H7M6 989 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 SAMSN1Q9NSI8 373 aaKnown RBP9.9□□□□□ -0.82
VPS39-207ENST00000563692 TMEM39AQ9NV64 488 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 KCND2Q9NZV8 630 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 MAPK8IP1Q9UQF2 711 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 SAMM50Q9Y512 469 aa9.9□□□□□ -0.82
VPS39-207ENST00000563692 PLXNA1Q9UIW2 1896 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 FRMPD3Q5JV73 1810 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 A0A0U1RQG5 324 aaPredicted RBP9.89□□□□□ -0.83
VPS39-207ENST00000563692 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms