RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 AASDHPPTQ9NRN7 309 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 UCKL1Q9NWZ5 548 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 FAM53CQ9NYF3 392 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 WASF3Q9UPY6 502 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 PCDHA5Q9Y5H7 936 aa6.54□□□□□ -1.36
LIMA1-205ENST00000550592 MYOCOSA0A1B0GUC4 107 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 ELL2O00472 640 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-205ENST00000550592 ABLIM3O94929 683 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 MT-CO1P00395 513 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 PRLP01236 227 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 C8BP07358 591 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 MANFP55145 182 aaKnown RBP6.53□□□□□ -1.36
LIMA1-205ENST00000550592 PIN1Q13526 163 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-205ENST00000550592 PCBP2Q15366 365 aaKnown RBP eCLIP6.53□□□□□ -1.36
LIMA1-205ENST00000550592 LIPIQ6XZB0 460 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 KANSL1Q7Z3B3 1105 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 TUBGCP5Q96RT8 1024 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 AMNQ9BXJ7 453 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 CDH19Q9H159 772 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 WNT8AQ9H1J5 351 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 POFUT1Q9H488 388 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 PCDH18Q9HCL0 1135 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 TCF7L1Q9HCS4 588 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 SLC39A2Q9NP94 309 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 INCENPQ9NQS7 918 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 SIRT5Q9NXA8 310 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 GALNT8Q9NY28 637 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 ZIM2Q9NZV7 527 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 RBPJLQ9UBG7 517 aa6.53□□□□□ -1.36
LIMA1-205ENST00000550592 TEX51A0A1B0GUA7 166 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 TSPAN6O43657 245 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PCDHGA12O60330 932 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PRPF6O94906 941 aaKnown RBP6.52□□□□□ -1.37
LIMA1-205ENST00000550592 ATF2P15336 505 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 ENPP1P22413 925 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 CCND1P24385 295 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 MC4RP32245 332 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 SLC6A3Q01959 620 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 ROM1Q03395 351 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 MYBPC3Q14896 1274 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PPP2R5AQ15172 486 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 CCDC181Q5TID7 509 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 VASNQ6EMK4 673 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PRR23BQ6ZRT6 265 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 B3GNT8Q7Z7M8 397 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 DTX3Q8N9I9 347 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 MYL10Q9BUA6 226 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 ANO3Q9BYT9 981 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 MCOLN1Q9GZU1 580 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 NSUN3Q9H649 340 aaKnown RBP6.52□□□□□ -1.37
LIMA1-205ENST00000550592 MKS1Q9NXB0 559 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.52□□□□□ -1.37
LIMA1-205ENST00000550592 MBD1Q9UIS9 605 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PCDHGA9Q9Y5G4 932 aaKnown RBP6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PCDHGA8Q9Y5G5 932 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PCDHGA7Q9Y5G6 932 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PCDHGA6Q9Y5G7 932 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PCDHGA3Q9Y5H0 932 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PCDHGA2Q9Y5H1 932 aa6.52□□□□□ -1.37
LIMA1-205ENST00000550592 PRSS38A1L453 326 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 H2AFYO75367 372 aaKnown RBP6.51□□□□□ -1.37
LIMA1-205ENST00000550592 CYP2C8P10632 490 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 IGFBP6P24592 240 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-205ENST00000550592 CDR1P51861 262 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 ADCY2Q08462 1091 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 LRRC41Q15345 812 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 SLFN12LQ6IEE8 588 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 KIAA1841Q6NSI8 718 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 CALML6Q8TD86 181 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 TMEM209Q96SK2 561 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 DIRC2Q96SL1 478 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 RTFDC1Q9BY42 306 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-205ENST00000550592 EPB41L4BQ9H329 900 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 DCP1AQ9NPI6 582 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-205ENST00000550592 DLL4Q9NR61 685 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 CCM2LQ9NUG4 571 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-205ENST00000550592 PPP2R3BQ9Y5P8 575 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 MRFAP1Q9Y605 127 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 NUMBLQ9Y6R0 609 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-205ENST00000550592 NCAPD3P42695 1498 aa6.51□□□□□ -1.37
LIMA1-205ENST00000550592 ARHGEF11O15085 1522 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 KLHL33A6NCF5 533 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 RFPL1O75677 317 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 SNUPNO95149 360 aaKnown RBP6.5□□□□□ -1.37
LIMA1-205ENST00000550592 ZSCAN20P17040 1043 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-205ENST00000550592 PFKLP17858 780 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 MC3RP41968 323 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 ECE1P42892 770 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 RECQLP46063 649 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-205ENST00000550592 RGS3P49796 1198 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 IRAK1P51617 712 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 NCKAP1LP55160 1127 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 UGT8Q16880 541 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 SKIDA1Q1XH10 827 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 HSP90AB2PQ58FF8 381 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 CT83Q5H943 113 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 ZBTB41Q5SVQ8 909 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 LRSAM1Q6UWE0 723 aa6.5□□□□□ -1.37
LIMA1-205ENST00000550592 TMC5Q6UXY8 1006 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms